Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
EPHB3P54753 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.56■□□□□ 0.24
EPHB3P54753 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.56■□□□□ 0.24
EPHB3P54753 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 BOLA2P3-201ENST00000404566 256 ntBASIC16.56■□□□□ 0.24
EPHB3P54753 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.56■□□□□ 0.24
EPHB3P54753 SOCS2P1-201ENST00000417727 557 ntBASIC16.56■□□□□ 0.24
EPHB3P54753 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.56■□□□□ 0.24
EPHB3P54753 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.56■□□□□ 0.24
EPHB3P54753 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.56■□□□□ 0.24
EPHB3P54753 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.56■□□□□ 0.24
EPHB3P54753 ENPP7P5-201ENST00000541031 1031 ntBASIC16.56■□□□□ 0.24
EPHB3P54753 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.56■□□□□ 0.24
EPHB3P54753 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.56■□□□□ 0.24
EPHB3P54753 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.56■□□□□ 0.24
EPHB3P54753 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.56■□□□□ 0.24
EPHB3P54753 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.56■□□□□ 0.24
EPHB3P54753 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.56■□□□□ 0.24
EPHB3P54753 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.56■□□□□ 0.24
EPHB3P54753 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.56■□□□□ 0.24
EPHB3P54753 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.56■□□□□ 0.24
EPHB3P54753 LTB4R2-202ENST00000528054 3092 ntBASIC16.56■□□□□ 0.24
EPHB3P54753 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
EPHB3P54753 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
EPHB3P54753 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.55■□□□□ 0.24
EPHB3P54753 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.55■□□□□ 0.24
EPHB3P54753 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.55■□□□□ 0.24
EPHB3P54753 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
EPHB3P54753 INTS4P2-202ENST00000614726 2019 ntBASIC16.55■□□□□ 0.24
EPHB3P54753 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
EPHB3P54753 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
EPHB3P54753 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.55■□□□□ 0.24
EPHB3P54753 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
EPHB3P54753 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
EPHB3P54753 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 ACTG1P3-201ENST00000431775 1114 ntBASIC16.55■□□□□ 0.24
EPHB3P54753 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.55■□□□□ 0.24
EPHB3P54753 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.55■□□□□ 0.24
EPHB3P54753 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.55■□□□□ 0.24
EPHB3P54753 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.55■□□□□ 0.24
EPHB3P54753 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.55■□□□□ 0.24
EPHB3P54753 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.55■□□□□ 0.24
EPHB3P54753 AL049840.4-201ENST00000602422 811 ntBASIC16.55■□□□□ 0.24
EPHB3P54753 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.55■□□□□ 0.24
EPHB3P54753 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.55■□□□□ 0.24
EPHB3P54753 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
EPHB3P54753 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.55■□□□□ 0.24
EPHB3P54753 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
EPHB3P54753 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.55■□□□□ 0.24
EPHB3P54753 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.55■□□□□ 0.24
EPHB3P54753 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
EPHB3P54753 AC011477.6-201ENST00000604980 1927 ntBASIC16.55■□□□□ 0.24
EPHB3P54753 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.54■□□□□ 0.24
EPHB3P54753 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.54■□□□□ 0.24
EPHB3P54753 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.54■□□□□ 0.24
EPHB3P54753 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 AC079328.2-201ENST00000561241 3354 ntBASIC16.54■□□□□ 0.24
EPHB3P54753 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms