Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AC138932.2-201ENST00000548268 1459 ntBASIC16.82■□□□□ 0.28
LHX1P48742 AC126755.4-201ENST00000549796 1459 ntBASIC16.82■□□□□ 0.28
LHX1P48742 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.82■□□□□ 0.28
LHX1P48742 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
LHX1P48742 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.82■□□□□ 0.28
LHX1P48742 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.82■□□□□ 0.28
LHX1P48742 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.82■□□□□ 0.28
LHX1P48742 MIR4313-201ENST00000580760 101 ntBASIC16.82■□□□□ 0.28
LHX1P48742 CHCHD2P3-201ENST00000603038 451 ntBASIC16.82■□□□□ 0.28
LHX1P48742 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.82■□□□□ 0.28
LHX1P48742 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
LHX1P48742 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LHX1P48742 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX1P48742 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
LHX1P48742 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX1P48742 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX1P48742 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LHX1P48742 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.81■□□□□ 0.28
LHX1P48742 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX1P48742 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.81■□□□□ 0.28
LHX1P48742 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX1P48742 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.81■□□□□ 0.28
LHX1P48742 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.81■□□□□ 0.28
LHX1P48742 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.81■□□□□ 0.28
LHX1P48742 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.81■□□□□ 0.28
LHX1P48742 AC093726.1-201ENST00000608064 963 ntBASIC16.81■□□□□ 0.28
LHX1P48742 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.81■□□□□ 0.28
LHX1P48742 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.81■□□□□ 0.28
LHX1P48742 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX1P48742 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX1P48742 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX1P48742 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.81■□□□□ 0.28
LHX1P48742 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.81■□□□□ 0.28
LHX1P48742 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX1P48742 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
LHX1P48742 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.81■□□□□ 0.28
LHX1P48742 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.81■□□□□ 0.28
LHX1P48742 AC099398.1-201ENST00000567919 2776 ntBASIC16.81■□□□□ 0.28
LHX1P48742 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LHX1P48742 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.81■□□□□ 0.28
LHX1P48742 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LHX1P48742 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX1P48742 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.8■□□□□ 0.28
LHX1P48742 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
LHX1P48742 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.8■□□□□ 0.28
LHX1P48742 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.8■□□□□ 0.28
LHX1P48742 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LHX1P48742 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
LHX1P48742 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.8■□□□□ 0.28
LHX1P48742 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.8■□□□□ 0.28
LHX1P48742 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 KRT18P64-201ENST00000434946 1219 ntBASIC16.8■□□□□ 0.28
LHX1P48742 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.8■□□□□ 0.28
LHX1P48742 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LHX1P48742 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.8■□□□□ 0.28
LHX1P48742 AP005018.1-201ENST00000525475 301 ntBASIC16.8■□□□□ 0.28
LHX1P48742 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.8■□□□□ 0.28
LHX1P48742 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.8■□□□□ 0.28
LHX1P48742 AL391069.4-201ENST00000609583 481 ntBASIC16.8■□□□□ 0.28
LHX1P48742 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.8■□□□□ 0.28
LHX1P48742 AL158212.4-201ENST00000624062 1286 ntBASIC16.8■□□□□ 0.28
LHX1P48742 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
LHX1P48742 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LHX1P48742 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX1P48742 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX1P48742 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX1P48742 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LHX1P48742 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX1P48742 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LHX1P48742 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX1P48742 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.79■□□□□ 0.28
LHX1P48742 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LHX1P48742 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LHX1P48742 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.79■□□□□ 0.28
LHX1P48742 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LHX1P48742 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.79■□□□□ 0.28
LHX1P48742 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms