Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.08■□□□□ 0
RFX3P48380 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.08■□□□□ 0
RFX3P48380 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.08■□□□□ 0
RFX3P48380 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
RFX3P48380 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
RFX3P48380 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.07■□□□□ 0
RFX3P48380 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.07■□□□□ 0
RFX3P48380 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.07■□□□□ 0
RFX3P48380 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.07■□□□□ 0
RFX3P48380 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.07■□□□□ 0
RFX3P48380 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.07■□□□□ 0
RFX3P48380 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.07■□□□□ 0
RFX3P48380 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
RFX3P48380 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.07■□□□□ 0
RFX3P48380 RNA5SP410-201ENST00000516285 106 ntBASIC15.07■□□□□ 0
RFX3P48380 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.07■□□□□ 0
RFX3P48380 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.07■□□□□ 0
RFX3P48380 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.07■□□□□ 0
RFX3P48380 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.07■□□□□ 0
RFX3P48380 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
RFX3P48380 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
RFX3P48380 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.07■□□□□ 0
RFX3P48380 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.07■□□□□ 0
RFX3P48380 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.07■□□□□ 0
RFX3P48380 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFX3P48380 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.07■□□□□ 0
RFX3P48380 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
RFX3P48380 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.06■□□□□ 0
RFX3P48380 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.06■□□□□ 0
RFX3P48380 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
RFX3P48380 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.06■□□□□ 0
RFX3P48380 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
RFX3P48380 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.06■□□□□ 0
RFX3P48380 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.06■□□□□ 0
RFX3P48380 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.06■□□□□ 0
RFX3P48380 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.06■□□□□ 0
RFX3P48380 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.06■□□□□ 0
RFX3P48380 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.06■□□□□ 0
RFX3P48380 RPS8P6-201ENST00000426177 609 ntBASIC15.06■□□□□ 0
RFX3P48380 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.06■□□□□ 0
RFX3P48380 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.06■□□□□ 0
RFX3P48380 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.06■□□□□ 0
RFX3P48380 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.06■□□□□ 0
RFX3P48380 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.06■□□□□ 0
RFX3P48380 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.06■□□□□ 0
RFX3P48380 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.06■□□□□ 0
RFX3P48380 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.06■□□□□ 0
RFX3P48380 SPTSSB-204ENST00000617024 1292 ntBASIC15.06■□□□□ 0
RFX3P48380 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.06■□□□□ 0
RFX3P48380 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.06■□□□□ 0
RFX3P48380 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.06■□□□□ 0
RFX3P48380 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
RFX3P48380 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms