Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC18.38■□□□□ 0.53
SCN4AP35499 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SCN4AP35499 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC18.38■□□□□ 0.53
SCN4AP35499 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
SCN4AP35499 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
SCN4AP35499 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.38■□□□□ 0.53
SCN4AP35499 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SCN4AP35499 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC18.38■□□□□ 0.53
SCN4AP35499 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC18.38■□□□□ 0.53
SCN4AP35499 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC18.38■□□□□ 0.53
SCN4AP35499 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.38■□□□□ 0.53
SCN4AP35499 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.38■□□□□ 0.53
SCN4AP35499 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SCN4AP35499 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SCN4AP35499 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SCN4AP35499 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
SCN4AP35499 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SCN4AP35499 AC097065.1-201ENST00000425737 517 ntBASIC18.37■□□□□ 0.53
SCN4AP35499 AC021723.1-201ENST00000486306 515 ntBASIC18.37■□□□□ 0.53
SCN4AP35499 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC18.37■□□□□ 0.53
SCN4AP35499 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SCN4AP35499 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SCN4AP35499 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SCN4AP35499 AC103691.2-201ENST00000618824 433 ntBASIC18.37■□□□□ 0.53
SCN4AP35499 AL805961.1-201ENST00000642026 753 ntBASIC18.37■□□□□ 0.53
SCN4AP35499 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SCN4AP35499 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SCN4AP35499 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.37■□□□□ 0.53
SCN4AP35499 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SCN4AP35499 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SCN4AP35499 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SCN4AP35499 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SCN4AP35499 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SCN4AP35499 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SCN4AP35499 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.37■□□□□ 0.53
SCN4AP35499 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.37■□□□□ 0.53
SCN4AP35499 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SCN4AP35499 RN7SKP214-201ENST00000364208 315 ntBASIC18.37■□□□□ 0.53
SCN4AP35499 DNAJB1P1-201ENST00000429417 1024 ntBASIC18.37■□□□□ 0.53
SCN4AP35499 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SCN4AP35499 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC18.37■□□□□ 0.53
SCN4AP35499 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC18.37■□□□□ 0.53
SCN4AP35499 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SCN4AP35499 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SCN4AP35499 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
SCN4AP35499 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
SCN4AP35499 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.36■□□□□ 0.53
SCN4AP35499 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SCN4AP35499 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 MIR1227-201ENST00000408484 88 ntBASIC18.36■□□□□ 0.53
SCN4AP35499 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC18.36■□□□□ 0.53
SCN4AP35499 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC18.36■□□□□ 0.53
SCN4AP35499 NEU3-205ENST00000531619 582 ntTSL 5 BASIC18.36■□□□□ 0.53
SCN4AP35499 AC242376.1-201ENST00000559033 726 ntBASIC18.36■□□□□ 0.53
SCN4AP35499 AC087045.2-201ENST00000606279 1003 ntBASIC18.36■□□□□ 0.53
SCN4AP35499 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 MVK-214ENST00000629016 1591 ntTSL 5 BASIC18.36■□□□□ 0.53
SCN4AP35499 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SCN4AP35499 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.36■□□□□ 0.53
SCN4AP35499 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SCN4AP35499 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SCN4AP35499 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.35■□□□□ 0.53
SCN4AP35499 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SCN4AP35499 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC18.35■□□□□ 0.53
SCN4AP35499 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SCN4AP35499 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC18.35■□□□□ 0.53
SCN4AP35499 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC18.35■□□□□ 0.53
SCN4AP35499 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC18.35■□□□□ 0.53
SCN4AP35499 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
SCN4AP35499 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SCN4AP35499 AL603764.1-201ENST00000636452 321 ntBASIC18.35■□□□□ 0.53
SCN4AP35499 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SCN4AP35499 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 AC007787.1-201ENST00000588095 1583 ntBASIC18.35■□□□□ 0.53
SCN4AP35499 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SCN4AP35499 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.35■□□□□ 0.53
SCN4AP35499 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms