Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A1P02462 AL096828.3-201ENST00000615354 462 ntBASIC19.1■□□□□ 0.65
COL4A1P02462 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A1P02462 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC19.1■□□□□ 0.65
COL4A1P02462 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A1P02462 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
COL4A1P02462 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
COL4A1P02462 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC19.09■□□□□ 0.65
COL4A1P02462 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC19.09■□□□□ 0.65
COL4A1P02462 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC19.09■□□□□ 0.65
COL4A1P02462 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A1P02462 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC19.09■□□□□ 0.65
COL4A1P02462 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A1P02462 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A1P02462 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC19.09■□□□□ 0.65
COL4A1P02462 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A1P02462 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A1P02462 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A1P02462 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A1P02462 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A1P02462 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A1P02462 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A1P02462 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A1P02462 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A1P02462 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC19.08■□□□□ 0.65
COL4A1P02462 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.65
COL4A1P02462 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A1P02462 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A1P02462 C2orf27AP3-201ENST00000434123 579 ntBASIC19.08■□□□□ 0.65
COL4A1P02462 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.65
COL4A1P02462 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A1P02462 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.65
COL4A1P02462 AP006547.1-201ENST00000563435 692 ntBASIC19.08■□□□□ 0.65
COL4A1P02462 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC19.08■□□□□ 0.65
COL4A1P02462 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC19.08■□□□□ 0.65
COL4A1P02462 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC19.08■□□□□ 0.65
COL4A1P02462 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC19.08■□□□□ 0.65
COL4A1P02462 KC6-205ENST00000599934 556 ntTSL 4 BASIC19.08■□□□□ 0.65
COL4A1P02462 AL354718.3-201ENST00000616414 581 ntBASIC19.08■□□□□ 0.65
COL4A1P02462 CR382287.1-201ENST00000623954 586 ntBASIC19.08■□□□□ 0.65
COL4A1P02462 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC19.08■□□□□ 0.65
COL4A1P02462 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.08■□□□□ 0.65
COL4A1P02462 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.08■□□□□ 0.65
COL4A1P02462 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC19.08■□□□□ 0.65
COL4A1P02462 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A1P02462 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A1P02462 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
COL4A1P02462 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
COL4A1P02462 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.08■□□□□ 0.64
COL4A1P02462 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC19.08■□□□□ 0.64
COL4A1P02462 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
COL4A1P02462 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC19.08■□□□□ 0.64
COL4A1P02462 MTX1P1-201ENST00000440904 838 ntBASIC19.08■□□□□ 0.64
COL4A1P02462 AL591846.1-201ENST00000451736 433 ntBASIC19.08■□□□□ 0.64
COL4A1P02462 ACTG1P17-201ENST00000558391 1119 ntBASIC19.08■□□□□ 0.64
COL4A1P02462 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC19.08■□□□□ 0.64
COL4A1P02462 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC19.08■□□□□ 0.64
COL4A1P02462 AL021578.1-201ENST00000613646 709 ntBASIC19.08■□□□□ 0.64
COL4A1P02462 AP005019.2-201ENST00000615104 511 ntBASIC19.08■□□□□ 0.64
COL4A1P02462 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC19.08■□□□□ 0.64
COL4A1P02462 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC19.08■□□□□ 0.64
COL4A1P02462 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
COL4A1P02462 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A1P02462 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A1P02462 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A1P02462 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A1P02462 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC19.07■□□□□ 0.64
COL4A1P02462 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.07■□□□□ 0.64
COL4A1P02462 AC010491.1-201ENST00000563101 2797 ntBASIC19.07■□□□□ 0.64
COL4A1P02462 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A1P02462 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A1P02462 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC19.07■□□□□ 0.64
COL4A1P02462 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC19.07■□□□□ 0.64
COL4A1P02462 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A1P02462 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A1P02462 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
COL4A1P02462 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A1P02462 PGGT1BP2-201ENST00000398621 1028 ntBASIC19.07■□□□□ 0.64
COL4A1P02462 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A1P02462 AC104306.2-201ENST00000451877 341 ntBASIC19.07■□□□□ 0.64
COL4A1P02462 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A1P02462 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms