Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TOP3BO95985 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.4■□□□□ 0.22
TOP3BO95985 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.4■□□□□ 0.22
TOP3BO95985 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.4■□□□□ 0.22
TOP3BO95985 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TOP3BO95985 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
TOP3BO95985 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.4■□□□□ 0.22
TOP3BO95985 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
TOP3BO95985 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TOP3BO95985 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TOP3BO95985 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TOP3BO95985 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.4■□□□□ 0.22
TOP3BO95985 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TOP3BO95985 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TOP3BO95985 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TOP3BO95985 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TOP3BO95985 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TOP3BO95985 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.4■□□□□ 0.22
TOP3BO95985 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.4■□□□□ 0.22
TOP3BO95985 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TOP3BO95985 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.4■□□□□ 0.22
TOP3BO95985 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.4■□□□□ 0.22
TOP3BO95985 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TOP3BO95985 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TOP3BO95985 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TOP3BO95985 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.4■□□□□ 0.22
TOP3BO95985 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TOP3BO95985 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TOP3BO95985 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
TOP3BO95985 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
TOP3BO95985 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TOP3BO95985 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.39■□□□□ 0.21
TOP3BO95985 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TOP3BO95985 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TOP3BO95985 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TOP3BO95985 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TOP3BO95985 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.39■□□□□ 0.21
TOP3BO95985 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.39■□□□□ 0.21
TOP3BO95985 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.39■□□□□ 0.21
TOP3BO95985 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.39■□□□□ 0.21
TOP3BO95985 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TOP3BO95985 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.39■□□□□ 0.21
TOP3BO95985 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.39■□□□□ 0.21
TOP3BO95985 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.39■□□□□ 0.21
TOP3BO95985 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.39■□□□□ 0.21
TOP3BO95985 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.39■□□□□ 0.21
TOP3BO95985 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.39■□□□□ 0.21
TOP3BO95985 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.39■□□□□ 0.21
TOP3BO95985 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
TOP3BO95985 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TOP3BO95985 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TOP3BO95985 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TOP3BO95985 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
TOP3BO95985 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.39■□□□□ 0.21
TOP3BO95985 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TOP3BO95985 AKAP8P1-201ENST00000434743 1349 ntBASIC16.39■□□□□ 0.21
TOP3BO95985 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TOP3BO95985 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TOP3BO95985 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
TOP3BO95985 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TOP3BO95985 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TOP3BO95985 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TOP3BO95985 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TOP3BO95985 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TOP3BO95985 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TOP3BO95985 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TOP3BO95985 AC100757.3-201ENST00000622361 1406 ntBASIC16.38■□□□□ 0.21
TOP3BO95985 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
TOP3BO95985 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TOP3BO95985 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TOP3BO95985 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TOP3BO95985 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TOP3BO95985 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TOP3BO95985 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TOP3BO95985 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TOP3BO95985 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.38■□□□□ 0.21
TOP3BO95985 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TOP3BO95985 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
TOP3BO95985 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TOP3BO95985 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.38■□□□□ 0.21
TOP3BO95985 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.38■□□□□ 0.21
TOP3BO95985 MIR1909-201ENST00000411312 80 ntBASIC16.38■□□□□ 0.21
TOP3BO95985 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TOP3BO95985 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.38■□□□□ 0.21
TOP3BO95985 TSSK5P-201ENST00000423978 907 ntBASIC16.38■□□□□ 0.21
TOP3BO95985 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
TOP3BO95985 SPTLC1P1-201ENST00000447199 261 ntBASIC16.38■□□□□ 0.21
TOP3BO95985 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TOP3BO95985 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.38■□□□□ 0.21
TOP3BO95985 POU5F1P6-201ENST00000466990 990 ntBASIC16.38■□□□□ 0.21
TOP3BO95985 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.38■□□□□ 0.21
TOP3BO95985 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.38■□□□□ 0.21
TOP3BO95985 AC027369.6-201ENST00000525520 931 ntBASIC16.38■□□□□ 0.21
TOP3BO95985 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.38■□□□□ 0.21
TOP3BO95985 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.38■□□□□ 0.21
TOP3BO95985 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
TOP3BO95985 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.38■□□□□ 0.21
TOP3BO95985 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TOP3BO95985 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.38■□□□□ 0.21
TOP3BO95985 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms