Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AL442647.2-201ENST00000429864 857 ntBASIC20.07■□□□□ 0.8
NPHP1O15259 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP1O15259 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC20.07■□□□□ 0.8
NPHP1O15259 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
NPHP1O15259 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP1O15259 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC20.07■□□□□ 0.8
NPHP1O15259 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC20.07■□□□□ 0.8
NPHP1O15259 WNT11-204ENST00000621122 789 ntTSL 5 BASIC20.07■□□□□ 0.8
NPHP1O15259 AL158212.4-201ENST00000624062 1286 ntBASIC20.07■□□□□ 0.8
NPHP1O15259 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
NPHP1O15259 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP1O15259 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP1O15259 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC20.07■□□□□ 0.8
NPHP1O15259 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
NPHP1O15259 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP1O15259 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP1O15259 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP1O15259 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
NPHP1O15259 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
NPHP1O15259 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 APOA1-205ENST00000375329 927 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP1O15259 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 ACTBP11-201ENST00000436287 1126 ntBASIC20.06■□□□□ 0.8
NPHP1O15259 BCRP2-202ENST00000447763 634 ntBASIC20.06■□□□□ 0.8
NPHP1O15259 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
NPHP1O15259 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 BCRP6-201ENST00000510112 632 ntBASIC20.06■□□□□ 0.8
NPHP1O15259 BCRP7-201ENST00000511549 544 ntBASIC20.06■□□□□ 0.8
NPHP1O15259 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC20.06■□□□□ 0.8
NPHP1O15259 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC20.06■□□□□ 0.8
NPHP1O15259 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC20.06■□□□□ 0.8
NPHP1O15259 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC20.06■□□□□ 0.8
NPHP1O15259 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC20.06■□□□□ 0.8
NPHP1O15259 GPR182-203ENST00000622922 591 ntBASIC20.06■□□□□ 0.8
NPHP1O15259 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
NPHP1O15259 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.06■□□□□ 0.8
NPHP1O15259 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC20.06■□□□□ 0.8
NPHP1O15259 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
NPHP1O15259 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
NPHP1O15259 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.06■□□□□ 0.8
NPHP1O15259 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NPHP1O15259 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
NPHP1O15259 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
NPHP1O15259 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP1O15259 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP1O15259 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP1O15259 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP1O15259 AC004987.2-201ENST00000395959 1148 ntBASIC20.05■□□□□ 0.8
NPHP1O15259 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC20.05■□□□□ 0.8
NPHP1O15259 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC20.05■□□□□ 0.8
NPHP1O15259 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC20.05■□□□□ 0.8
NPHP1O15259 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC20.05■□□□□ 0.8
NPHP1O15259 USB1-203ENST00000539737 1212 ntTSL 2 BASIC20.05■□□□□ 0.8
NPHP1O15259 AC243562.2-201ENST00000561247 970 ntBASIC20.05■□□□□ 0.8
NPHP1O15259 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
NPHP1O15259 AL606495.2-201ENST00000605867 535 ntBASIC20.05■□□□□ 0.8
NPHP1O15259 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC20.05■□□□□ 0.8
NPHP1O15259 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC20.05■□□□□ 0.8
NPHP1O15259 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP1O15259 AC007326.2-201ENST00000624224 7579 ntBASIC20.05■□□□□ 0.8
NPHP1O15259 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC20.05■□□□□ 0.8
NPHP1O15259 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC20.05■□□□□ 0.8
NPHP1O15259 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
NPHP1O15259 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
NPHP1O15259 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP1O15259 AL133338.1-201ENST00000565695 1517 ntBASIC20.05■□□□□ 0.8
NPHP1O15259 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC20.05■□□□□ 0.8
NPHP1O15259 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
NPHP1O15259 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP1O15259 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC20.05■□□□□ 0.8
NPHP1O15259 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
NPHP1O15259 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC20.05■□□□□ 0.8
NPHP1O15259 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP1O15259 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP1O15259 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC20.04■□□□□ 0.8
NPHP1O15259 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP1O15259 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP1O15259 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC20.04■□□□□ 0.8
NPHP1O15259 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
NPHP1O15259 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC20.04■□□□□ 0.8
NPHP1O15259 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC20.04■□□□□ 0.8
NPHP1O15259 RPL28-203ENST00000428193 573 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP1O15259 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC20.04■□□□□ 0.8
NPHP1O15259 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms