Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 IGF1-203ENST00000392904 761 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 KRTAP19-9P-201ENST00000421795 191 ntBASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 AP002490.2-201ENST00000524791 560 ntBASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 IFT20-206ENST00000578122 834 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 IFT20-208ENST00000578985 831 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 MIR3619-201ENST00000579667 83 ntBASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 AC097724.1-201ENST00000609581 426 ntBASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 AC015818.8-201ENST00000587907 1519 ntBASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC9Q9Y3X0 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 ACKR1-201ENST00000368121 1240 ntBASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 HLA-DQB2-229ENST00000411527 1059 ntBASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 CU633904.3-201ENST00000624042 1029 ntBASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CCDC9Q9Y3X0 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 AC139713.2-201ENST00000641328 2723 ntBASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC9Q9Y3X0 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms