Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 SMS-201ENST00000379404 1174 ntTSL 3 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 CD8B2-202ENST00000417670 633 ntBASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 AL645728.2-202ENST00000641679 227 ntBASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 SPTLC1P5-201ENST00000450718 252 ntBASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC20.16■□□□□ 0.82
SHANK3Q9BYB0 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 MIR33B-201ENST00000385104 96 ntBASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 AL645939.5-201ENST00000606834 243 ntBASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHANK3Q9BYB0 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
SHANK3Q9BYB0 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 AMT-224ENST00000635808 1610 ntTSL 5 BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC20.14■□□□□ 0.81
SHANK3Q9BYB0 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 LSM5-207ENST00000410044 687 ntTSL 3 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 AC007274.2-201ENST00000421675 662 ntBASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 ZACNP1-201ENST00000612259 710 ntBASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 LRRC59-203ENST00000576448 1531 ntBASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 SP100-205ENST00000409824 1802 ntTSL 5 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms