Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 PGAM1P5-201ENST00000548011 764 ntBASIC15.46■□□□□ 0.07
VPS13AQ96RL7 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 PPY2P-201ENST00000582808 702 ntBASIC15.46■□□□□ 0.07
VPS13AQ96RL7 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.46■□□□□ 0.06
VPS13AQ96RL7 FGFR3P1-201ENST00000449999 601 ntBASIC15.46■□□□□ 0.06
VPS13AQ96RL7 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC15.46■□□□□ 0.06
VPS13AQ96RL7 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.06
VPS13AQ96RL7 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
VPS13AQ96RL7 AL022344.2-201ENST00000568976 968 ntBASIC15.46■□□□□ 0.06
VPS13AQ96RL7 EIF5AP2-201ENST00000585668 1047 ntBASIC15.46■□□□□ 0.06
VPS13AQ96RL7 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
VPS13AQ96RL7 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
VPS13AQ96RL7 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
VPS13AQ96RL7 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.46■□□□□ 0.06
VPS13AQ96RL7 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.45■□□□□ 0.06
VPS13AQ96RL7 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 AL805961.1-201ENST00000642026 753 ntBASIC15.45■□□□□ 0.06
VPS13AQ96RL7 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.45■□□□□ 0.06
VPS13AQ96RL7 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 DNAJB1P1-201ENST00000429417 1024 ntBASIC15.45■□□□□ 0.06
VPS13AQ96RL7 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 AC124947.2-201ENST00000547118 1133 ntBASIC15.45■□□□□ 0.06
VPS13AQ96RL7 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 AC016396.2-201ENST00000562575 1417 ntBASIC15.45■□□□□ 0.06
VPS13AQ96RL7 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13AQ96RL7 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 SLED1-202ENST00000512051 380 ntBASIC15.44■□□□□ 0.06
VPS13AQ96RL7 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 RN7SL596P-201ENST00000582123 288 ntBASIC15.44■□□□□ 0.06
VPS13AQ96RL7 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC15.44■□□□□ 0.06
VPS13AQ96RL7 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 AC127024.7-201ENST00000625101 200 ntBASIC15.44■□□□□ 0.06
VPS13AQ96RL7 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms