Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 TMBIM7P-203ENST00000641617 1718 ntBASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 HNRNPA1P28-201ENST00000424481 961 ntBASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 TPM4P1-201ENST00000436100 807 ntBASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 AC243562.2-201ENST00000561247 970 ntBASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 AC064836.3-201ENST00000607928 673 ntBASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 AC126177.1-201ENST00000547829 2218 ntBASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 AC020658.6-201ENST00000623564 1870 ntBASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 MRPL3P1-201ENST00000400109 1033 ntBASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 GPX1P2-201ENST00000429271 606 ntBASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 AC074386.1-202ENST00000463561 864 ntBASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 AC105233.2-201ENST00000523697 349 ntBASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 EHF-205ENST00000527935 557 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 AF228730.5-201ENST00000530288 346 ntBASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 KRT126P-201ENST00000549467 1181 ntBASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 SLC25A6P4-201ENST00000586535 553 ntBASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 OR2I1P-210ENST00000642037 4691 ntBASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC54Q8NEL0 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms