Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 FAM86GP-201ENST00000448322 971 ntBASIC19.28■□□□□ 0.68
VPS53Q5VIR6 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 SPDYE12P-201ENST00000618416 771 ntBASIC19.28■□□□□ 0.68
VPS53Q5VIR6 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 TREML5P-201ENST00000421694 576 ntBASIC19.27■□□□□ 0.68
VPS53Q5VIR6 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 AC092580.3-201ENST00000430932 139 ntBASIC19.27■□□□□ 0.68
VPS53Q5VIR6 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 FO538757.1-201ENST00000623083 1397 ntBASIC19.27■□□□□ 0.68
VPS53Q5VIR6 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS53Q5VIR6 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS53Q5VIR6 AC018892.3-201ENST00000623986 2499 ntBASIC19.27■□□□□ 0.67
VPS53Q5VIR6 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC19.27■□□□□ 0.67
VPS53Q5VIR6 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
VPS53Q5VIR6 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.27■□□□□ 0.67
VPS53Q5VIR6 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
VPS53Q5VIR6 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC19.27■□□□□ 0.67
VPS53Q5VIR6 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 AC107890.1-201ENST00000422478 521 ntBASIC19.26■□□□□ 0.67
VPS53Q5VIR6 AL139010.1-201ENST00000454878 894 ntBASIC19.26■□□□□ 0.67
VPS53Q5VIR6 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS53Q5VIR6 AP003680.1-201ENST00000598970 3660 ntBASIC19.26■□□□□ 0.67
VPS53Q5VIR6 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms