Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MIR3180-3-201ENST00000584616 94 ntBASIC13.36□□□□□ -0.27
HOXA1P49639 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC13.36□□□□□ -0.27
HOXA1P49639 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC13.36□□□□□ -0.27
HOXA1P49639 SIGLEC29P-201ENST00000599873 1114 ntBASIC13.36□□□□□ -0.27
HOXA1P49639 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
HOXA1P49639 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXA1P49639 AP000550.4-202ENST00000639755 178 ntBASIC13.36□□□□□ -0.27
HOXA1P49639 AC006486.2-201ENST00000624246 2199 ntBASIC13.36□□□□□ -0.27
HOXA1P49639 KRT8P39-201ENST00000396270 1433 ntBASIC13.36□□□□□ -0.27
HOXA1P49639 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXA1P49639 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXA1P49639 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXA1P49639 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 CICP17-201ENST00000418553 2377 ntBASIC13.36□□□□□ -0.27
HOXA1P49639 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
HOXA1P49639 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXA1P49639 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
HOXA1P49639 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
HOXA1P49639 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
HOXA1P49639 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXA1P49639 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC13.35□□□□□ -0.27
HOXA1P49639 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC13.35□□□□□ -0.27
HOXA1P49639 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
HOXA1P49639 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXA1P49639 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
HOXA1P49639 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXA1P49639 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
HOXA1P49639 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC13.35□□□□□ -0.27
HOXA1P49639 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
HOXA1P49639 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC13.35□□□□□ -0.27
HOXA1P49639 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC13.35□□□□□ -0.27
HOXA1P49639 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC13.35□□□□□ -0.27
HOXA1P49639 PRYP5-201ENST00000451909 266 ntBASIC13.35□□□□□ -0.27
HOXA1P49639 KRT16P4-201ENST00000453883 522 ntBASIC13.35□□□□□ -0.27
HOXA1P49639 AC132008.2-207ENST00000454517 770 ntBASIC13.35□□□□□ -0.27
HOXA1P49639 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC13.35□□□□□ -0.27
HOXA1P49639 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC13.35□□□□□ -0.27
HOXA1P49639 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC13.35□□□□□ -0.27
HOXA1P49639 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC13.35□□□□□ -0.27
HOXA1P49639 AC091167.2-201ENST00000579581 588 ntBASIC13.35□□□□□ -0.27
HOXA1P49639 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC13.35□□□□□ -0.27
HOXA1P49639 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
HOXA1P49639 AL589182.2-201ENST00000619332 1049 ntBASIC13.35□□□□□ -0.27
HOXA1P49639 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXA1P49639 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXA1P49639 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXA1P49639 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
HOXA1P49639 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
HOXA1P49639 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.35□□□□□ -0.27
HOXA1P49639 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXA1P49639 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
HOXA1P49639 AL512652.2-201ENST00000625156 1716 ntBASIC13.35□□□□□ -0.27
HOXA1P49639 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
HOXA1P49639 PCGF3-213ENST00000620529 1899 ntBASIC13.35□□□□□ -0.27
HOXA1P49639 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC13.35□□□□□ -0.27
HOXA1P49639 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 PC-214ENST00000628663 1470 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXA1P49639 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.35□□□□□ -0.27
HOXA1P49639 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXA1P49639 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC13.34□□□□□ -0.27
HOXA1P49639 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HOXA1P49639 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HOXA1P49639 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXA1P49639 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
HOXA1P49639 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
HOXA1P49639 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
HOXA1P49639 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXA1P49639 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms