Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PPT1-215ENST00000641471 2368 ntBASIC13.14□□□□□ -0.31
CDX1P47902 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.13□□□□□ -0.31
CDX1P47902 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.13□□□□□ -0.31
CDX1P47902 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
CDX1P47902 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC13.13□□□□□ -0.31
CDX1P47902 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.13□□□□□ -0.31
CDX1P47902 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 AC007191.1-201ENST00000623179 2995 ntBASIC13.13□□□□□ -0.31
CDX1P47902 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC13.13□□□□□ -0.31
CDX1P47902 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.13□□□□□ -0.31
CDX1P47902 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 TOP3BP1-201ENST00000420768 1380 ntBASIC13.13□□□□□ -0.31
CDX1P47902 AL021920.2-201ENST00000624828 1351 ntBASIC13.13□□□□□ -0.31
CDX1P47902 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CDX1P47902 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC13.13□□□□□ -0.31
CDX1P47902 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 AC211486.1-202ENST00000416371 468 ntBASIC13.13□□□□□ -0.31
CDX1P47902 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 AC211476.1-201ENST00000503899 468 ntBASIC13.13□□□□□ -0.31
CDX1P47902 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC13.13□□□□□ -0.31
CDX1P47902 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC13.13□□□□□ -0.31
CDX1P47902 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CDX1P47902 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC13.13□□□□□ -0.31
CDX1P47902 MIR4515-201ENST00000584082 81 ntBASIC13.13□□□□□ -0.31
CDX1P47902 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC13.13□□□□□ -0.31
CDX1P47902 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC13.13□□□□□ -0.31
CDX1P47902 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC13.13□□□□□ -0.31
CDX1P47902 AC068137.2-201ENST00000605408 478 ntBASIC13.13□□□□□ -0.31
CDX1P47902 AC055717.3-201ENST00000622967 595 ntBASIC13.13□□□□□ -0.31
CDX1P47902 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
CDX1P47902 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.13□□□□□ -0.31
CDX1P47902 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CDX1P47902 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC13.13□□□□□ -0.31
CDX1P47902 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CDX1P47902 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC13.13□□□□□ -0.31
CDX1P47902 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC13.13□□□□□ -0.31
CDX1P47902 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CDX1P47902 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC13.13□□□□□ -0.31
CDX1P47902 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CDX1P47902 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
CDX1P47902 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CDX1P47902 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
CDX1P47902 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.12□□□□□ -0.31
CDX1P47902 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.12□□□□□ -0.31
CDX1P47902 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC13.12□□□□□ -0.31
CDX1P47902 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
CDX1P47902 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
CDX1P47902 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC13.12□□□□□ -0.31
CDX1P47902 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
CDX1P47902 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC13.12□□□□□ -0.31
CDX1P47902 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 AL353732.1-201ENST00000569618 1459 ntBASIC13.12□□□□□ -0.31
CDX1P47902 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.12□□□□□ -0.31
CDX1P47902 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CDX1P47902 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC13.12□□□□□ -0.31
CDX1P47902 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.12□□□□□ -0.31
CDX1P47902 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 DDT-204ENST00000404092 805 ntTSL 3 BASIC13.12□□□□□ -0.31
CDX1P47902 FALEC-201ENST00000416894 566 ntTSL 3 BASIC13.12□□□□□ -0.31
CDX1P47902 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC13.12□□□□□ -0.31
CDX1P47902 AC004967.1-201ENST00000453589 447 ntBASIC13.12□□□□□ -0.31
CDX1P47902 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC13.12□□□□□ -0.31
CDX1P47902 RPL28-209ENST00000560055 670 ntTSL 3 BASIC13.12□□□□□ -0.31
CDX1P47902 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms