Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
BRCA1P38398 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
BRCA1P38398 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BRCA1P38398 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
BRCA1P38398 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
BRCA1P38398 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18.9■□□□□ 0.62
BRCA1P38398 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18.9■□□□□ 0.62
BRCA1P38398 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
BRCA1P38398 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.9■□□□□ 0.62
BRCA1P38398 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BRCA1P38398 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
BRCA1P38398 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.9■□□□□ 0.62
BRCA1P38398 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
BRCA1P38398 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC18.9■□□□□ 0.62
BRCA1P38398 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
BRCA1P38398 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
BRCA1P38398 AC078991.1-201ENST00000437297 610 ntBASIC18.9■□□□□ 0.62
BRCA1P38398 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
BRCA1P38398 RTN3P1-201ENST00000536295 711 ntBASIC18.9■□□□□ 0.62
BRCA1P38398 PGAM1P5-201ENST00000548011 764 ntBASIC18.9■□□□□ 0.62
BRCA1P38398 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC18.9■□□□□ 0.62
BRCA1P38398 AC009955.4-201ENST00000597192 544 ntBASIC18.9■□□□□ 0.62
BRCA1P38398 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC18.9■□□□□ 0.62
BRCA1P38398 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC18.9■□□□□ 0.62
BRCA1P38398 AC105020.1-201ENST00000435356 2205 ntBASIC18.89■□□□□ 0.62
BRCA1P38398 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
BRCA1P38398 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
BRCA1P38398 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
BRCA1P38398 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC18.89■□□□□ 0.61
BRCA1P38398 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC18.89■□□□□ 0.61
BRCA1P38398 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
BRCA1P38398 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC18.89■□□□□ 0.61
BRCA1P38398 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC18.89■□□□□ 0.61
BRCA1P38398 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC18.89■□□□□ 0.61
BRCA1P38398 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC18.89■□□□□ 0.61
BRCA1P38398 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.89■□□□□ 0.61
BRCA1P38398 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
BRCA1P38398 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
BRCA1P38398 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
BRCA1P38398 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
BRCA1P38398 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
BRCA1P38398 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
BRCA1P38398 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.88■□□□□ 0.61
BRCA1P38398 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
BRCA1P38398 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
BRCA1P38398 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.88■□□□□ 0.61
BRCA1P38398 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
BRCA1P38398 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
BRCA1P38398 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
BRCA1P38398 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
BRCA1P38398 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC18.88■□□□□ 0.61
BRCA1P38398 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
BRCA1P38398 ISCA2P1-201ENST00000425548 448 ntBASIC18.88■□□□□ 0.61
BRCA1P38398 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC18.88■□□□□ 0.61
BRCA1P38398 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC18.88■□□□□ 0.61
BRCA1P38398 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC18.88■□□□□ 0.61
BRCA1P38398 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC18.88■□□□□ 0.61
BRCA1P38398 AC242376.1-201ENST00000559033 726 ntBASIC18.88■□□□□ 0.61
BRCA1P38398 STUB1-204ENST00000564370 875 ntTSL 2 BASIC18.88■□□□□ 0.61
BRCA1P38398 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
BRCA1P38398 AC025181.2-201ENST00000606994 802 ntBASIC18.88■□□□□ 0.61
BRCA1P38398 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC18.88■□□□□ 0.61
BRCA1P38398 AL805961.1-201ENST00000642026 753 ntBASIC18.88■□□□□ 0.61
BRCA1P38398 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
BRCA1P38398 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
BRCA1P38398 MFF-204ENST00000353339 2186 ntTSL 5 BASIC18.88■□□□□ 0.61
BRCA1P38398 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
BRCA1P38398 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
BRCA1P38398 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
BRCA1P38398 KRT8P29-201ENST00000420409 1371 ntBASIC18.88■□□□□ 0.61
BRCA1P38398 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
BRCA1P38398 RNF216P1-203ENST00000404404 2427 ntBASIC18.88■□□□□ 0.61
BRCA1P38398 RN7SKP175-201ENST00000408472 289 ntBASIC18.88■□□□□ 0.61
BRCA1P38398 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
BRCA1P38398 AC006335.1-201ENST00000445200 547 ntBASIC18.88■□□□□ 0.61
BRCA1P38398 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC18.88■□□□□ 0.61
BRCA1P38398 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC18.88■□□□□ 0.61
BRCA1P38398 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC18.88■□□□□ 0.61
BRCA1P38398 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
BRCA1P38398 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
BRCA1P38398 AMT-224ENST00000635808 1610 ntTSL 5 BASIC18.88■□□□□ 0.61
BRCA1P38398 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
BRCA1P38398 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
BRCA1P38398 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
BRCA1P38398 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
BRCA1P38398 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.87■□□□□ 0.61
BRCA1P38398 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.87■□□□□ 0.61
BRCA1P38398 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.87■□□□□ 0.61
BRCA1P38398 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.87■□□□□ 0.61
BRCA1P38398 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 CLUHP2-201ENST00000426660 1303 ntBASIC18.87■□□□□ 0.61
BRCA1P38398 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC18.87■□□□□ 0.61
BRCA1P38398 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC18.87■□□□□ 0.61
BRCA1P38398 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms