Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC18.49■□□□□ 0.55
ERCC3P19447 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
ERCC3P19447 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
ERCC3P19447 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC18.49■□□□□ 0.55
ERCC3P19447 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC18.49■□□□□ 0.55
ERCC3P19447 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC18.49■□□□□ 0.55
ERCC3P19447 TTTY23B-201ENST00000442790 549 ntBASIC18.49■□□□□ 0.55
ERCC3P19447 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.49■□□□□ 0.55
ERCC3P19447 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC18.49■□□□□ 0.55
ERCC3P19447 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC18.49■□□□□ 0.55
ERCC3P19447 RAB43P1-201ENST00000561790 589 ntBASIC18.49■□□□□ 0.55
ERCC3P19447 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC18.49■□□□□ 0.55
ERCC3P19447 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC18.49■□□□□ 0.55
ERCC3P19447 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
ERCC3P19447 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.49■□□□□ 0.55
ERCC3P19447 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.49■□□□□ 0.55
ERCC3P19447 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.49■□□□□ 0.55
ERCC3P19447 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC3P19447 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.49■□□□□ 0.55
ERCC3P19447 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
ERCC3P19447 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.49■□□□□ 0.55
ERCC3P19447 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.49■□□□□ 0.55
ERCC3P19447 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC3P19447 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
ERCC3P19447 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.48■□□□□ 0.55
ERCC3P19447 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
ERCC3P19447 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC3P19447 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC3P19447 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.48■□□□□ 0.55
ERCC3P19447 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.48■□□□□ 0.55
ERCC3P19447 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.48■□□□□ 0.55
ERCC3P19447 FO393414.2-201ENST00000405153 598 ntBASIC18.48■□□□□ 0.55
ERCC3P19447 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.48■□□□□ 0.55
ERCC3P19447 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC3P19447 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.48■□□□□ 0.55
ERCC3P19447 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC18.48■□□□□ 0.55
ERCC3P19447 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
ERCC3P19447 AL365330.1-201ENST00000607459 531 ntBASIC18.48■□□□□ 0.55
ERCC3P19447 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC3P19447 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC3P19447 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC18.48■□□□□ 0.55
ERCC3P19447 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC3P19447 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC3P19447 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC3P19447 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC3P19447 CICP6-201ENST00000457191 2729 ntBASIC18.48■□□□□ 0.55
ERCC3P19447 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC3P19447 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.48■□□□□ 0.55
ERCC3P19447 ACE-204ENST00000428043 5120 ntTSL 2 BASIC18.47■□□□□ 0.55
ERCC3P19447 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC3P19447 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.47■□□□□ 0.55
ERCC3P19447 GGT3P-204ENST00000453783 1664 ntBASIC18.47■□□□□ 0.55
ERCC3P19447 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
ERCC3P19447 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC3P19447 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC3P19447 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.47■□□□□ 0.55
ERCC3P19447 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.47■□□□□ 0.55
ERCC3P19447 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC3P19447 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC3P19447 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC3P19447 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
ERCC3P19447 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC3P19447 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
ERCC3P19447 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC3P19447 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC18.47■□□□□ 0.55
ERCC3P19447 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
ERCC3P19447 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC3P19447 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC3P19447 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC18.47■□□□□ 0.55
ERCC3P19447 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC3P19447 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC3P19447 FUZ-207ENST00000526575 482 ntTSL 4 BASIC18.47■□□□□ 0.55
ERCC3P19447 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.47■□□□□ 0.55
ERCC3P19447 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.47■□□□□ 0.55
ERCC3P19447 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC18.47■□□□□ 0.55
ERCC3P19447 TIMM17BP1-201ENST00000545713 516 ntBASIC18.47■□□□□ 0.55
ERCC3P19447 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.47■□□□□ 0.55
ERCC3P19447 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.47■□□□□ 0.55
ERCC3P19447 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
ERCC3P19447 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.47■□□□□ 0.55
ERCC3P19447 WFDC1-204ENST00000613603 549 ntBASIC18.47■□□□□ 0.55
ERCC3P19447 MIR6805-201ENST00000615055 62 ntBASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms