Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.17■□□□□ 0.18
HLA-DQB2P05538 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 AC092127.1-201ENST00000567093 3455 ntBASIC16.17■□□□□ 0.18
HLA-DQB2P05538 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.17■□□□□ 0.18
HLA-DQB2P05538 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 FO393414.2-201ENST00000405153 598 ntBASIC16.16■□□□□ 0.18
HLA-DQB2P05538 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.16■□□□□ 0.18
HLA-DQB2P05538 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 DUX4L27-201ENST00000554796 1261 ntBASIC16.16■□□□□ 0.18
HLA-DQB2P05538 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQB2P05538 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 AC136604.1-201ENST00000418535 575 ntBASIC16.15■□□□□ 0.18
HLA-DQB2P05538 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 AL512361.1-201ENST00000554200 418 ntBASIC16.15■□□□□ 0.18
HLA-DQB2P05538 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 AC106028.4-201ENST00000614509 607 ntBASIC16.15■□□□□ 0.18
HLA-DQB2P05538 AL607033.1-201ENST00000623900 1599 ntBASIC16.15■□□□□ 0.18
HLA-DQB2P05538 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQB2P05538 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms