Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDKL5O76039 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CDKL5O76039 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDKL5O76039 AC018892.3-201ENST00000623986 2499 ntBASIC18.56■□□□□ 0.56
CDKL5O76039 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CDKL5O76039 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDKL5O76039 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CDKL5O76039 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CDKL5O76039 DNAJB3-202ENST00000449667 1266 ntBASIC18.56■□□□□ 0.56
CDKL5O76039 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.56■□□□□ 0.56
CDKL5O76039 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CDKL5O76039 AC027612.4-201ENST00000605371 583 ntBASIC18.56■□□□□ 0.56
CDKL5O76039 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CDKL5O76039 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDKL5O76039 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDKL5O76039 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.56■□□□□ 0.56
CDKL5O76039 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDKL5O76039 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CDKL5O76039 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC18.56■□□□□ 0.56
CDKL5O76039 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDKL5O76039 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.56■□□□□ 0.56
CDKL5O76039 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
CDKL5O76039 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.56■□□□□ 0.56
CDKL5O76039 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.56■□□□□ 0.56
CDKL5O76039 AC068587.6-202ENST00000641839 5619 ntBASIC18.55■□□□□ 0.56
CDKL5O76039 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 PKD1P5-201ENST00000532415 10291 ntBASIC18.55■□□□□ 0.56
CDKL5O76039 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.55■□□□□ 0.56
CDKL5O76039 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.55■□□□□ 0.56
CDKL5O76039 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CDKL5O76039 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC18.55■□□□□ 0.56
CDKL5O76039 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CDKL5O76039 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.55■□□□□ 0.56
CDKL5O76039 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CDKL5O76039 SPDYE17-201ENST00000412399 783 ntBASIC18.55■□□□□ 0.56
CDKL5O76039 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.55■□□□□ 0.56
CDKL5O76039 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.55■□□□□ 0.56
CDKL5O76039 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.55■□□□□ 0.56
CDKL5O76039 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.55■□□□□ 0.56
CDKL5O76039 MIR4453-201ENST00000584019 89 ntBASIC18.55■□□□□ 0.56
CDKL5O76039 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.55■□□□□ 0.56
CDKL5O76039 RN7SL828P-201ENST00000607615 303 ntBASIC18.55■□□□□ 0.56
CDKL5O76039 AC023511.2-201ENST00000618803 211 ntBASIC18.55■□□□□ 0.56
CDKL5O76039 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.55■□□□□ 0.56
CDKL5O76039 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.55■□□□□ 0.56
CDKL5O76039 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
CDKL5O76039 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDKL5O76039 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.54■□□□□ 0.56
CDKL5O76039 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CDKL5O76039 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
CDKL5O76039 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.54■□□□□ 0.56
CDKL5O76039 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.54■□□□□ 0.56
CDKL5O76039 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CDKL5O76039 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.54■□□□□ 0.56
CDKL5O76039 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CDKL5O76039 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.54■□□□□ 0.56
CDKL5O76039 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.54■□□□□ 0.56
CDKL5O76039 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.54■□□□□ 0.56
CDKL5O76039 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.54■□□□□ 0.56
CDKL5O76039 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.54■□□□□ 0.56
CDKL5O76039 LINC00628-201ENST00000628516 1289 ntBASIC18.54■□□□□ 0.56
CDKL5O76039 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.54■□□□□ 0.56
CDKL5O76039 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.54■□□□□ 0.56
CDKL5O76039 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.54■□□□□ 0.56
CDKL5O76039 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.54■□□□□ 0.56
CDKL5O76039 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CDKL5O76039 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC18.54■□□□□ 0.56
CDKL5O76039 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.54■□□□□ 0.56
CDKL5O76039 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDKL5O76039 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms