Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
UPK1AO00322 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
UPK1AO00322 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
UPK1AO00322 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
UPK1AO00322 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.17■□□□□ 0.02
UPK1AO00322 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
UPK1AO00322 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
UPK1AO00322 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.17■□□□□ 0.02
UPK1AO00322 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.16■□□□□ 0.02
UPK1AO00322 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.16■□□□□ 0.02
UPK1AO00322 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
UPK1AO00322 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
UPK1AO00322 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.16■□□□□ 0.02
UPK1AO00322 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.16■□□□□ 0.02
UPK1AO00322 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.16■□□□□ 0.02
UPK1AO00322 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.16■□□□□ 0.02
UPK1AO00322 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.16■□□□□ 0.02
UPK1AO00322 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 HAUS4P1-201ENST00000406739 1145 ntBASIC15.16■□□□□ 0.02
UPK1AO00322 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.16■□□□□ 0.02
UPK1AO00322 CEND1P1-201ENST00000451006 455 ntBASIC15.16■□□□□ 0.02
UPK1AO00322 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.16■□□□□ 0.02
UPK1AO00322 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
UPK1AO00322 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.16■□□□□ 0.02
UPK1AO00322 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.16■□□□□ 0.02
UPK1AO00322 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.16■□□□□ 0.02
UPK1AO00322 AP000842.3-202ENST00000569238 1080 ntBASIC15.16■□□□□ 0.02
UPK1AO00322 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.16■□□□□ 0.02
UPK1AO00322 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.16■□□□□ 0.02
UPK1AO00322 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
UPK1AO00322 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.16■□□□□ 0.02
UPK1AO00322 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
UPK1AO00322 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
UPK1AO00322 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.16■□□□□ 0.02
UPK1AO00322 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
UPK1AO00322 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
UPK1AO00322 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.15■□□□□ 0.02
UPK1AO00322 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.15■□□□□ 0.02
UPK1AO00322 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
UPK1AO00322 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
UPK1AO00322 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.15■□□□□ 0.02
UPK1AO00322 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
UPK1AO00322 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.15■□□□□ 0.02
UPK1AO00322 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
UPK1AO00322 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.15■□□□□ 0.02
UPK1AO00322 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.15■□□□□ 0.02
UPK1AO00322 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
UPK1AO00322 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
UPK1AO00322 AC087481.3-201ENST00000602886 1894 ntBASIC15.15■□□□□ 0.02
UPK1AO00322 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
UPK1AO00322 GPX1P2-201ENST00000429271 606 ntBASIC15.15■□□□□ 0.02
UPK1AO00322 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.15■□□□□ 0.02
UPK1AO00322 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.15■□□□□ 0.02
UPK1AO00322 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.15■□□□□ 0.02
UPK1AO00322 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.15■□□□□ 0.02
UPK1AO00322 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.15■□□□□ 0.02
UPK1AO00322 YBX1P5-201ENST00000509441 847 ntBASIC15.15■□□□□ 0.02
UPK1AO00322 IGHV3-62-201ENST00000520057 340 ntBASIC15.15■□□□□ 0.02
UPK1AO00322 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.15■□□□□ 0.02
UPK1AO00322 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.15■□□□□ 0.02
UPK1AO00322 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.15■□□□□ 0.02
UPK1AO00322 KRT8P23-201ENST00000560090 1207 ntBASIC15.15■□□□□ 0.02
UPK1AO00322 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.15■□□□□ 0.02
UPK1AO00322 MIR4469-201ENST00000583919 79 ntBASIC15.15■□□□□ 0.02
UPK1AO00322 AC105339.1-204ENST00000636249 355 ntBASIC15.15■□□□□ 0.02
UPK1AO00322 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
UPK1AO00322 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
UPK1AO00322 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
UPK1AO00322 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
UPK1AO00322 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
UPK1AO00322 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
UPK1AO00322 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
UPK1AO00322 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
UPK1AO00322 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
UPK1AO00322 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.15■□□□□ 0.02
UPK1AO00322 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
UPK1AO00322 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
UPK1AO00322 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
UPK1AO00322 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms