Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 VWA5B1-201ENST00000289815 4475 ntAPPRIS ALT2 TSL 5 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 PKD1L2-210ENST00000533478 5669 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 PKN2-203ENST00000370521 6121 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 MIR939-201ENST00000401314 82 ntBASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 GUSBP5-201ENST00000418136 578 ntBASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 NBPF1-203ENST00000430580 5932 ntAPPRIS P5 TSL 5 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 KRT18P11-201ENST00000435214 1283 ntBASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 AC004264.1-201ENST00000608354 794 ntBASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 AL139327.4-201ENST00000612362 153 ntBASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 SP2-202ENST00000613139 908 ntTSL 5 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 AL121829.2-201ENST00000620908 328 ntBASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 AP001972.5-201ENST00000624624 2338 ntBASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 PAPLN-203ENST00000554301 4090 ntAPPRIS ALT2 TSL 2 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 DLX1-201ENST00000341900 2130 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 AL109954.1-202ENST00000564051 2148 ntBASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 AP000845.1-201ENST00000581677 2131 ntBASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 LAMB1-204ENST00000393561 5766 ntTSL 5 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 WARS-232ENST00000556645 2508 ntTSL 5 BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 TSC22D1-203ENST00000458659 4820 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 FAM200B-223ENST00000622362 4377 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 PLEC-204ENST00000354958 14751 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHKB-CPT1BH3BT56 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -1
CHKB-CPT1BH3BT56 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC8.84□□□□□ -1
CHKB-CPT1BH3BT56 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC8.84□□□□□ -1
CHKB-CPT1BH3BT56 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 OS9-206ENST00000435406 2346 ntTSL 2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 MED29-202ENST00000594368 1471 ntTSL 2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 LGALS8-208ENST00000416919 6097 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 USP31-201ENST00000219689 10699 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 ZBTB44-202ENST00000397753 3951 ntAPPRIS ALT2 TSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 VCPIP1-201ENST00000310421 9942 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 AMBRA1-201ENST00000314845 5023 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 RAD50-201ENST00000378823 8306 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 TJAP1-205ENST00000372452 2665 ntAPPRIS P1 TSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 ME2P1-201ENST00000426028 1970 ntBASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 NLGN3-206ENST00000612180 3319 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 ATP8B2-202ENST00000368489 5861 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 PTPRS-201ENST00000262963 4766 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 PTPRS-210ENST00000592099 4766 ntTSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms