Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
ZC3H4Q9UPT8 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
ZC3H4Q9UPT8 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
ZC3H4Q9UPT8 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC28.82■■■□□ 2.2
ZC3H4Q9UPT8 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC28.82■■■□□ 2.2
ZC3H4Q9UPT8 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
ZC3H4Q9UPT8 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC28.81■■■□□ 2.2
ZC3H4Q9UPT8 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC28.81■■■□□ 2.2
ZC3H4Q9UPT8 STOX2-205ENST00000513034 807 ntTSL 3 BASIC28.81■■■□□ 2.2
ZC3H4Q9UPT8 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC28.81■■■□□ 2.2
ZC3H4Q9UPT8 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
ZC3H4Q9UPT8 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
ZC3H4Q9UPT8 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC28.8■■■□□ 2.2
ZC3H4Q9UPT8 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC28.8■■■□□ 2.2
ZC3H4Q9UPT8 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
ZC3H4Q9UPT8 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
ZC3H4Q9UPT8 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC28.79■■■□□ 2.2
ZC3H4Q9UPT8 PROC-203ENST00000409048 1586 ntTSL 5 BASIC28.79■■■□□ 2.2
ZC3H4Q9UPT8 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC28.79■■■□□ 2.2
ZC3H4Q9UPT8 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC28.79■■■□□ 2.2
ZC3H4Q9UPT8 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
ZC3H4Q9UPT8 RASA4CP-201ENST00000424092 1398 ntBASIC28.79■■■□□ 2.2
ZC3H4Q9UPT8 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
ZC3H4Q9UPT8 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
ZC3H4Q9UPT8 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC28.78■■■□□ 2.2
ZC3H4Q9UPT8 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
ZC3H4Q9UPT8 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
ZC3H4Q9UPT8 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC28.77■■■□□ 2.2
ZC3H4Q9UPT8 AL449106.1-201ENST00000608517 1980 ntBASIC28.77■■■□□ 2.2
ZC3H4Q9UPT8 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
ZC3H4Q9UPT8 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
ZC3H4Q9UPT8 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
ZC3H4Q9UPT8 CA15P2-201ENST00000611168 834 ntBASIC28.76■■■□□ 2.19
ZC3H4Q9UPT8 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
ZC3H4Q9UPT8 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC28.76■■■□□ 2.19
ZC3H4Q9UPT8 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
ZC3H4Q9UPT8 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
ZC3H4Q9UPT8 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC28.76■■■□□ 2.19
ZC3H4Q9UPT8 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
ZC3H4Q9UPT8 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC28.75■■■□□ 2.19
ZC3H4Q9UPT8 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC28.75■■■□□ 2.19
ZC3H4Q9UPT8 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
ZC3H4Q9UPT8 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC28.74■■■□□ 2.19
ZC3H4Q9UPT8 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
ZC3H4Q9UPT8 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC28.73■■■□□ 2.19
ZC3H4Q9UPT8 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
ZC3H4Q9UPT8 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC28.73■■■□□ 2.19
ZC3H4Q9UPT8 BX255925.1-201ENST00000566954 1854 ntBASIC28.73■■■□□ 2.19
ZC3H4Q9UPT8 AC027682.1-201ENST00000562846 899 ntBASIC28.72■■■□□ 2.19
ZC3H4Q9UPT8 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
ZC3H4Q9UPT8 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
ZC3H4Q9UPT8 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
ZC3H4Q9UPT8 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
ZC3H4Q9UPT8 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
ZC3H4Q9UPT8 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
ZC3H4Q9UPT8 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC28.71■■■□□ 2.19
ZC3H4Q9UPT8 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
ZC3H4Q9UPT8 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC28.71■■■□□ 2.19
ZC3H4Q9UPT8 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC28.7■■■□□ 2.19
ZC3H4Q9UPT8 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
ZC3H4Q9UPT8 AC092171.4-201ENST00000609130 632 ntBASIC28.7■■■□□ 2.19
ZC3H4Q9UPT8 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC28.7■■■□□ 2.19
ZC3H4Q9UPT8 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
ZC3H4Q9UPT8 MIR4767-201ENST00000582827 78 ntBASIC28.69■■■□□ 2.18
ZC3H4Q9UPT8 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
ZC3H4Q9UPT8 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
ZC3H4Q9UPT8 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
ZC3H4Q9UPT8 IRS3P-201ENST00000223076 1006 ntBASIC28.69■■■□□ 2.18
ZC3H4Q9UPT8 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
ZC3H4Q9UPT8 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC28.68■■■□□ 2.18
ZC3H4Q9UPT8 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
ZC3H4Q9UPT8 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC28.68■■■□□ 2.18
ZC3H4Q9UPT8 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
ZC3H4Q9UPT8 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC28.68■■■□□ 2.18
ZC3H4Q9UPT8 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
ZC3H4Q9UPT8 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
ZC3H4Q9UPT8 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
ZC3H4Q9UPT8 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC28.67■■■□□ 2.18
ZC3H4Q9UPT8 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
ZC3H4Q9UPT8 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC28.66■■■□□ 2.18
ZC3H4Q9UPT8 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
ZC3H4Q9UPT8 MAG-206ENST00000597035 542 ntTSL 4 BASIC28.66■■■□□ 2.18
ZC3H4Q9UPT8 SYT6-210ENST00000641643 1587 ntBASIC28.65■■■□□ 2.18
ZC3H4Q9UPT8 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC28.65■■■□□ 2.18
ZC3H4Q9UPT8 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC28.65■■■□□ 2.18
ZC3H4Q9UPT8 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC28.65■■■□□ 2.18
ZC3H4Q9UPT8 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC28.65■■■□□ 2.18
ZC3H4Q9UPT8 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC28.65■■■□□ 2.18
ZC3H4Q9UPT8 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC28.65■■■□□ 2.18
ZC3H4Q9UPT8 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC28.65■■■□□ 2.18
ZC3H4Q9UPT8 PTMA-205ENST00000410064 814 ntTSL 2 BASIC28.65■■■□□ 2.18
ZC3H4Q9UPT8 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC28.65■■■□□ 2.18
ZC3H4Q9UPT8 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
ZC3H4Q9UPT8 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC28.65■■■□□ 2.18
ZC3H4Q9UPT8 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
ZC3H4Q9UPT8 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
ZC3H4Q9UPT8 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC28.64■■■□□ 2.18
ZC3H4Q9UPT8 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.17
ZC3H4Q9UPT8 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC28.64■■■□□ 2.17
ZC3H4Q9UPT8 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC28.64■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms