Protein–RNA interactions for Protein: P0CH09

RPL40B, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40BP0CH09 LPX1YOR084W 1164 nt11.89□□□□□ -0.51
RPL40BP0CH09 ERV46YAL042W 1248 nt11.84□□□□□ -0.51
RPL40BP0CH09 SPT5YML010W 3192 nt11.83□□□□□ -0.52
RPL40BP0CH09 YLR154C-GYLR154C-G 150 nt11.81□□□□□ -0.52
RPL40BP0CH09 SSA4YER103W 1929 nt11.72□□□□□ -0.53
RPL40BP0CH09 YKR040CYKR040C 504 nt11.65□□□□□ -0.54
RPL40BP0CH09 FPR4YLR449W 1179 nt11.65□□□□□ -0.54
RPL40BP0CH09 YDR433WYDR433W 441 nt11.64□□□□□ -0.55
RPL40BP0CH09 BUD23YCR047C 828 nt11.62□□□□□ -0.55
RPL40BP0CH09 TRM9YML014W 840 nt11.62□□□□□ -0.55
RPL40BP0CH09 PTC2YER089C 1395 nt11.62□□□□□ -0.55
RPL40BP0CH09 IDH1YNL037C 1083 nt11.61□□□□□ -0.55
RPL40BP0CH09 YBL100CYBL100C 315 nt11.59□□□□□ -0.55
RPL40BP0CH09 INM2YDR287W 879 nt11.56□□□□□ -0.56
RPL40BP0CH09 PAU16YKL224C 372 nt11.53□□□□□ -0.56
RPL40BP0CH09 YJL152WYJL152W 360 nt11.51□□□□□ -0.57
RPL40BP0CH09 FUN26YAL022C 1554 nt11.47□□□□□ -0.57
RPL40BP0CH09 CCT6YDR188W 1641 nt11.44□□□□□ -0.58
RPL40BP0CH09 MXR2YCL033C 507 nt11.42□□□□□ -0.58
RPL40BP0CH09 NAB2YGL122C 1578 nt11.41□□□□□ -0.58
RPL40BP0CH09 RRT5YFR032C 870 nt11.38□□□□□ -0.59
RPL40BP0CH09 DAL1YIR027C 1383 nt11.38□□□□□ -0.59
RPL40BP0CH09 GBP2YCL011C 1284 nt11.37□□□□□ -0.59
RPL40BP0CH09 BDF1YLR399C 2061 nt11.32□□□□□ -0.6
RPL40BP0CH09 SUF2tP(AGG)C 72 nt11.32□□□□□ -0.6
RPL40BP0CH09 SUF10tP(AGG)N 72 nt11.32□□□□□ -0.6
RPL40BP0CH09 YFR018CYFR018C 1092 nt11.29□□□□□ -0.6
RPL40BP0CH09 YKL030WYKL030W 606 nt11.28□□□□□ -0.6
RPL40BP0CH09 MEP2YNL142W 1500 nt11.27□□□□□ -0.61
RPL40BP0CH09 FIS1YIL065C 468 nt11.27□□□□□ -0.61
RPL40BP0CH09 YLR235CYLR235C 399 nt11.27□□□□□ -0.61
RPL40BP0CH09 PHO4YFR034C 939 nt11.25□□□□□ -0.61
RPL40BP0CH09 SNF6YHL025W 999 nt11.25□□□□□ -0.61
RPL40BP0CH09 PTH1YHR189W 573 nt11.2□□□□□ -0.62
RPL40BP0CH09 PRE6YOL038W 765 nt11.2□□□□□ -0.62
RPL40BP0CH09 TAT1YBR069C 1860 nt11.19□□□□□ -0.62
RPL40BP0CH09 ALF1YNL148C 765 nt11.17□□□□□ -0.62
RPL40BP0CH09 FRD1YEL047C 1413 nt11.14□□□□□ -0.63
RPL40BP0CH09 YPS1YLR120C 1710 nt11.12□□□□□ -0.63
RPL40BP0CH09 TCD2YKL027W 1344 nt11.12□□□□□ -0.63
RPL40BP0CH09 LCB1YMR296C 1677 nt11.11□□□□□ -0.63
RPL40BP0CH09 tL(GAG)GtL(GAG)G 82 nt11.08□□□□□ -0.64
RPL40BP0CH09 NAT4YMR069W 858 nt11.07□□□□□ -0.64
RPL40BP0CH09 YMR244WYMR244W 1068 nt11.07□□□□□ -0.64
RPL40BP0CH09 TIM23YNR017W 669 nt11.06□□□□□ -0.64
RPL40BP0CH09 DCW1YKL046C 1350 nt11.05□□□□□ -0.64
RPL40BP0CH09 TIR4YOR009W 1464 nt11.03□□□□□ -0.64
RPL40BP0CH09 YCL048W-AYCL048W-A 240 nt10.98□□□□□ -0.65
RPL40BP0CH09 CAC2YML102W 1407 nt10.97□□□□□ -0.65
RPL40BP0CH09 YHR165W-AYHR165W-A 312 nt10.95□□□□□ -0.66
RPL40BP0CH09 DIC1YLR348C 897 nt10.95□□□□□ -0.66
RPL40BP0CH09 YCL042WYCL042W 360 nt10.94□□□□□ -0.66
RPL40BP0CH09 PAC11YDR488C 1602 nt10.91□□□□□ -0.66
RPL40BP0CH09 EMI2YDR516C 1503 nt10.91□□□□□ -0.66
RPL40BP0CH09 YMR090WYMR090W 684 nt10.91□□□□□ -0.66
RPL40BP0CH09 YBR220CYBR220C 1683 nt10.91□□□□□ -0.66
RPL40BP0CH09 GLK1YCL040W 1503 nt10.89□□□□□ -0.67
RPL40BP0CH09 DED1YOR204W 1815 nt10.89□□□□□ -0.67
RPL40BP0CH09 RPM1RPM1 483 nt10.88□□□□□ -0.67
RPL40BP0CH09 YDR095CYDR095C 411 nt10.87□□□□□ -0.67
RPL40BP0CH09 MSF1YPR047W 1410 nt10.85□□□□□ -0.67
RPL40BP0CH09 RBG2YGR173W 1107 nt10.85□□□□□ -0.67
RPL40BP0CH09 GLR1YPL091W 1452 nt10.85□□□□□ -0.67
RPL40BP0CH09 SOR2YDL246C 1074 nt10.84□□□□□ -0.67
RPL40BP0CH09 SOR1YJR159W 1074 nt10.84□□□□□ -0.67
RPL40BP0CH09 YFL066CYFL066C 1179 nt10.81□□□□□ -0.68
RPL40BP0CH09 YMR057CYMR057C 372 nt10.8□□□□□ -0.68
RPL40BP0CH09 YDL221WYDL221W 552 nt10.79□□□□□ -0.68
RPL40BP0CH09 RRD1YIL153W 1182 nt10.79□□□□□ -0.68
RPL40BP0CH09 SDH1YKL148C 1923 nt10.77□□□□□ -0.69
RPL40BP0CH09 PEX25YPL112C 1185 nt10.76□□□□□ -0.69
RPL40BP0CH09 YPR064WYPR064W 420 nt10.75□□□□□ -0.69
RPL40BP0CH09 THI74YDR438W 1113 nt10.73□□□□□ -0.69
RPL40BP0CH09 FMT1YBL013W 1206 nt10.71□□□□□ -0.69
RPL40BP0CH09 TAD3YLR316C 969 nt10.7□□□□□ -0.7
RPL40BP0CH09 PET9YBL030C 957 nt10.7□□□□□ -0.7
RPL40BP0CH09 YLR179CYLR179C 606 nt10.69□□□□□ -0.7
RPL40BP0CH09 ART5YGR068C 1761 nt10.67□□□□□ -0.7
RPL40BP0CH09 PCH2YBR186W 1695 nt10.66□□□□□ -0.7
RPL40BP0CH09 PTP1YDL230W 1008 nt10.66□□□□□ -0.7
RPL40BP0CH09 RPP2AYOL039W 321 nt10.66□□□□□ -0.7
RPL40BP0CH09 SEC11YIR022W 504 nt10.64□□□□□ -0.71
RPL40BP0CH09 MIR1YJR077C 936 nt10.64□□□□□ -0.71
RPL40BP0CH09 SAM1YLR180W 1149 nt10.63□□□□□ -0.71
RPL40BP0CH09 GUT2YIL155C 1950 nt10.62□□□□□ -0.71
RPL40BP0CH09 SCC4YER147C 1875 nt10.61□□□□□ -0.71
RPL40BP0CH09 RAD51YER095W 1203 nt10.61□□□□□ -0.71
RPL40BP0CH09 YNL115CYNL115C 1935 nt10.58□□□□□ -0.72
RPL40BP0CH09 CWP1YKL096W 720 nt10.56□□□□□ -0.72
RPL40BP0CH09 WSC2YNL283C 1512 nt10.55□□□□□ -0.72
RPL40BP0CH09 AHT1YHR093W 549 nt10.54□□□□□ -0.72
RPL40BP0CH09 NVJ2YPR091C 2313 nt10.54□□□□□ -0.72
RPL40BP0CH09 GFD2YCL036W 1701 nt10.54□□□□□ -0.72
RPL40BP0CH09 IRC15YPL017C 1500 nt10.53□□□□□ -0.72
RPL40BP0CH09 YSP3YOR003W 1437 nt10.52□□□□□ -0.73
RPL40BP0CH09 FMP52YER004W 696 nt10.52□□□□□ -0.73
RPL40BP0CH09 DAT1YML113W 747 nt10.51□□□□□ -0.73
RPL40BP0CH09 FPS1YLL043W 2010 nt10.51□□□□□ -0.73
RPL40BP0CH09 NDI1YML120C 1542 nt10.5□□□□□ -0.73
RPL40BP0CH09 YGL034CYGL034C 366 nt10.49□□□□□ -0.73
Retrieved 100 of 7,029 protein–RNA pairs in 12.5 ms