Protein–RNA interactions for Protein: P0CH08

RPL40A, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40AP0CH08 LPX1YOR084W 1164 nt11.89□□□□□ -0.51
RPL40AP0CH08 ERV46YAL042W 1248 nt11.84□□□□□ -0.51
RPL40AP0CH08 SPT5YML010W 3192 nt11.83□□□□□ -0.52
RPL40AP0CH08 YLR154C-GYLR154C-G 150 nt11.81□□□□□ -0.52
RPL40AP0CH08 SSA4YER103W 1929 nt11.72□□□□□ -0.53
RPL40AP0CH08 YKR040CYKR040C 504 nt11.65□□□□□ -0.54
RPL40AP0CH08 FPR4YLR449W 1179 nt11.65□□□□□ -0.54
RPL40AP0CH08 YDR433WYDR433W 441 nt11.64□□□□□ -0.55
RPL40AP0CH08 BUD23YCR047C 828 nt11.62□□□□□ -0.55
RPL40AP0CH08 TRM9YML014W 840 nt11.62□□□□□ -0.55
RPL40AP0CH08 PTC2YER089C 1395 nt11.62□□□□□ -0.55
RPL40AP0CH08 IDH1YNL037C 1083 nt11.61□□□□□ -0.55
RPL40AP0CH08 YBL100CYBL100C 315 nt11.59□□□□□ -0.55
RPL40AP0CH08 INM2YDR287W 879 nt11.56□□□□□ -0.56
RPL40AP0CH08 PAU16YKL224C 372 nt11.53□□□□□ -0.56
RPL40AP0CH08 YJL152WYJL152W 360 nt11.51□□□□□ -0.57
RPL40AP0CH08 FUN26YAL022C 1554 nt11.47□□□□□ -0.57
RPL40AP0CH08 CCT6YDR188W 1641 nt11.44□□□□□ -0.58
RPL40AP0CH08 MXR2YCL033C 507 nt11.42□□□□□ -0.58
RPL40AP0CH08 NAB2YGL122C 1578 nt11.41□□□□□ -0.58
RPL40AP0CH08 RRT5YFR032C 870 nt11.38□□□□□ -0.59
RPL40AP0CH08 DAL1YIR027C 1383 nt11.38□□□□□ -0.59
RPL40AP0CH08 GBP2YCL011C 1284 nt11.37□□□□□ -0.59
RPL40AP0CH08 BDF1YLR399C 2061 nt11.32□□□□□ -0.6
RPL40AP0CH08 SUF2tP(AGG)C 72 nt11.32□□□□□ -0.6
RPL40AP0CH08 SUF10tP(AGG)N 72 nt11.32□□□□□ -0.6
RPL40AP0CH08 YFR018CYFR018C 1092 nt11.29□□□□□ -0.6
RPL40AP0CH08 YKL030WYKL030W 606 nt11.28□□□□□ -0.6
RPL40AP0CH08 MEP2YNL142W 1500 nt11.27□□□□□ -0.61
RPL40AP0CH08 FIS1YIL065C 468 nt11.27□□□□□ -0.61
RPL40AP0CH08 YLR235CYLR235C 399 nt11.27□□□□□ -0.61
RPL40AP0CH08 PHO4YFR034C 939 nt11.25□□□□□ -0.61
RPL40AP0CH08 SNF6YHL025W 999 nt11.25□□□□□ -0.61
RPL40AP0CH08 PTH1YHR189W 573 nt11.2□□□□□ -0.62
RPL40AP0CH08 PRE6YOL038W 765 nt11.2□□□□□ -0.62
RPL40AP0CH08 TAT1YBR069C 1860 nt11.19□□□□□ -0.62
RPL40AP0CH08 ALF1YNL148C 765 nt11.17□□□□□ -0.62
RPL40AP0CH08 FRD1YEL047C 1413 nt11.14□□□□□ -0.63
RPL40AP0CH08 YPS1YLR120C 1710 nt11.12□□□□□ -0.63
RPL40AP0CH08 TCD2YKL027W 1344 nt11.12□□□□□ -0.63
RPL40AP0CH08 LCB1YMR296C 1677 nt11.11□□□□□ -0.63
RPL40AP0CH08 tL(GAG)GtL(GAG)G 82 nt11.08□□□□□ -0.64
RPL40AP0CH08 NAT4YMR069W 858 nt11.07□□□□□ -0.64
RPL40AP0CH08 YMR244WYMR244W 1068 nt11.07□□□□□ -0.64
RPL40AP0CH08 TIM23YNR017W 669 nt11.06□□□□□ -0.64
RPL40AP0CH08 DCW1YKL046C 1350 nt11.05□□□□□ -0.64
RPL40AP0CH08 TIR4YOR009W 1464 nt11.03□□□□□ -0.64
RPL40AP0CH08 YCL048W-AYCL048W-A 240 nt10.98□□□□□ -0.65
RPL40AP0CH08 CAC2YML102W 1407 nt10.97□□□□□ -0.65
RPL40AP0CH08 YHR165W-AYHR165W-A 312 nt10.95□□□□□ -0.66
RPL40AP0CH08 DIC1YLR348C 897 nt10.95□□□□□ -0.66
RPL40AP0CH08 YCL042WYCL042W 360 nt10.94□□□□□ -0.66
RPL40AP0CH08 PAC11YDR488C 1602 nt10.91□□□□□ -0.66
RPL40AP0CH08 EMI2YDR516C 1503 nt10.91□□□□□ -0.66
RPL40AP0CH08 YMR090WYMR090W 684 nt10.91□□□□□ -0.66
RPL40AP0CH08 YBR220CYBR220C 1683 nt10.91□□□□□ -0.66
RPL40AP0CH08 GLK1YCL040W 1503 nt10.89□□□□□ -0.67
RPL40AP0CH08 DED1YOR204W 1815 nt10.89□□□□□ -0.67
RPL40AP0CH08 RPM1RPM1 483 nt10.88□□□□□ -0.67
RPL40AP0CH08 YDR095CYDR095C 411 nt10.87□□□□□ -0.67
RPL40AP0CH08 MSF1YPR047W 1410 nt10.85□□□□□ -0.67
RPL40AP0CH08 RBG2YGR173W 1107 nt10.85□□□□□ -0.67
RPL40AP0CH08 GLR1YPL091W 1452 nt10.85□□□□□ -0.67
RPL40AP0CH08 SOR2YDL246C 1074 nt10.84□□□□□ -0.67
RPL40AP0CH08 SOR1YJR159W 1074 nt10.84□□□□□ -0.67
RPL40AP0CH08 YFL066CYFL066C 1179 nt10.81□□□□□ -0.68
RPL40AP0CH08 YMR057CYMR057C 372 nt10.8□□□□□ -0.68
RPL40AP0CH08 YDL221WYDL221W 552 nt10.79□□□□□ -0.68
RPL40AP0CH08 RRD1YIL153W 1182 nt10.79□□□□□ -0.68
RPL40AP0CH08 SDH1YKL148C 1923 nt10.77□□□□□ -0.69
RPL40AP0CH08 PEX25YPL112C 1185 nt10.76□□□□□ -0.69
RPL40AP0CH08 YPR064WYPR064W 420 nt10.75□□□□□ -0.69
RPL40AP0CH08 THI74YDR438W 1113 nt10.73□□□□□ -0.69
RPL40AP0CH08 FMT1YBL013W 1206 nt10.71□□□□□ -0.69
RPL40AP0CH08 TAD3YLR316C 969 nt10.7□□□□□ -0.7
RPL40AP0CH08 PET9YBL030C 957 nt10.7□□□□□ -0.7
RPL40AP0CH08 YLR179CYLR179C 606 nt10.69□□□□□ -0.7
RPL40AP0CH08 ART5YGR068C 1761 nt10.67□□□□□ -0.7
RPL40AP0CH08 PCH2YBR186W 1695 nt10.66□□□□□ -0.7
RPL40AP0CH08 PTP1YDL230W 1008 nt10.66□□□□□ -0.7
RPL40AP0CH08 RPP2AYOL039W 321 nt10.66□□□□□ -0.7
RPL40AP0CH08 SEC11YIR022W 504 nt10.64□□□□□ -0.71
RPL40AP0CH08 MIR1YJR077C 936 nt10.64□□□□□ -0.71
RPL40AP0CH08 SAM1YLR180W 1149 nt10.63□□□□□ -0.71
RPL40AP0CH08 GUT2YIL155C 1950 nt10.62□□□□□ -0.71
RPL40AP0CH08 SCC4YER147C 1875 nt10.61□□□□□ -0.71
RPL40AP0CH08 RAD51YER095W 1203 nt10.61□□□□□ -0.71
RPL40AP0CH08 YNL115CYNL115C 1935 nt10.58□□□□□ -0.72
RPL40AP0CH08 CWP1YKL096W 720 nt10.56□□□□□ -0.72
RPL40AP0CH08 WSC2YNL283C 1512 nt10.55□□□□□ -0.72
RPL40AP0CH08 AHT1YHR093W 549 nt10.54□□□□□ -0.72
RPL40AP0CH08 NVJ2YPR091C 2313 nt10.54□□□□□ -0.72
RPL40AP0CH08 GFD2YCL036W 1701 nt10.54□□□□□ -0.72
RPL40AP0CH08 IRC15YPL017C 1500 nt10.53□□□□□ -0.72
RPL40AP0CH08 YSP3YOR003W 1437 nt10.52□□□□□ -0.73
RPL40AP0CH08 FMP52YER004W 696 nt10.52□□□□□ -0.73
RPL40AP0CH08 DAT1YML113W 747 nt10.51□□□□□ -0.73
RPL40AP0CH08 FPS1YLL043W 2010 nt10.51□□□□□ -0.73
RPL40AP0CH08 NDI1YML120C 1542 nt10.5□□□□□ -0.73
RPL40AP0CH08 YGL034CYGL034C 366 nt10.49□□□□□ -0.73
Retrieved 100 of 7,029 protein–RNA pairs in 10.6 ms