Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 PCDHA14-201ENST00000506751 2298 ntBASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 AL162726.2-201ENST00000438986 1017 ntBASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 MIR5189-201ENST00000577370 114 ntBASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMD1Q9UGP4 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
LIMD1Q9UGP4 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
LIMD1Q9UGP4 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
LIMD1Q9UGP4 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
LIMD1Q9UGP4 AGGF1P2-201ENST00000426656 2106 ntBASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 GPAA1P2-202ENST00000606848 1787 ntBASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 AC004945.1-201ENST00000416738 983 ntBASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 AC099548.2-209ENST00000480264 625 ntBASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 AL139011.1-202ENST00000642063 584 ntBASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 AL136982.4-201ENST00000437689 1740 ntBASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMD1Q9UGP4 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms