Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC18.58■□□□□ 0.57
CCDC39Q9UFE4 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.58■□□□□ 0.57
CCDC39Q9UFE4 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 AC140658.5-201ENST00000438532 169 ntBASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 AL591424.1-201ENST00000442569 1213 ntBASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 RNA5SP416-201ENST00000516838 111 ntBASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 AC106730.1-201ENST00000566722 1090 ntBASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 AL359258.3-201ENST00000622910 2331 ntBASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 AC136621.1-201ENST00000624017 2304 ntBASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 AC106881.1-201ENST00000605849 3329 ntBASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC39Q9UFE4 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 SLC25A1P1-201ENST00000528351 927 ntBASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 POLL-206ENST00000370172 2308 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 CICP4-201ENST00000447359 2812 ntBASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 AC069224.1-201ENST00000566372 1715 ntBASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC39Q9UFE4 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 AC104581.4-201ENST00000623126 3052 ntBASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 AC092474.2-201ENST00000424288 719 ntBASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms