Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 AC017083.2-201ENST00000608069 979 ntBASIC16■□□□□ 0.15
TM9SF3Q9HD45 AC099568.2-201ENST00000609194 695 ntBASIC16■□□□□ 0.15
TM9SF3Q9HD45 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 PCGF3-213ENST00000620529 1899 ntBASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 AC079776.1-201ENST00000401540 1152 ntBASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 AC123567.1-201ENST00000548294 1261 ntBASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 AL662844.4-201ENST00000606367 2838 ntBASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
TM9SF3Q9HD45 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 ACA64.2-201ENST00000459014 129 ntBASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 RN7SL837P-201ENST00000463010 287 ntBASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 ELK1P1-201ENST00000485699 580 ntBASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 AC079328.2-201ENST00000561241 3354 ntBASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 CTBP2P3-201ENST00000585629 1255 ntBASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms