Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 CALR4P-201ENST00000431943 946 ntBASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 PARP8-218ENST00000513738 596 ntTSL 4 BASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 AL022328.3-201ENST00000607943 679 ntBASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 AP005019.2-201ENST00000615104 511 ntBASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RTFDC1Q9BY42 AL138709.1-201ENST00000614840 1693 ntBASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 AD000864.1-201ENST00000624076 2295 ntBASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 FAM197Y7-201ENST00000432892 766 ntBASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 AL591846.1-201ENST00000451736 433 ntBASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 AP001258.2-201ENST00000529891 490 ntBASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 AC078819.1-201ENST00000547454 765 ntBASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 AC012085.1-201ENST00000548270 765 ntBASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 KLK3-211ENST00000597483 810 ntTSL 2 BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 PRKN-211ENST00000615065 261 ntTSL 5 BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RTFDC1Q9BY42 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 Z93015.1-201ENST00000451718 390 ntBASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 RHOQP1-201ENST00000555758 579 ntBASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 AC132938.4-201ENST00000623835 848 ntBASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
RTFDC1Q9BY42 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RTFDC1Q9BY42 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RTFDC1Q9BY42 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
RTFDC1Q9BY42 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RTFDC1Q9BY42 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RTFDC1Q9BY42 TK1-203ENST00000588734 1681 ntTSL 2 BASIC19.15■□□□□ 0.66
RTFDC1Q9BY42 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.15■□□□□ 0.66
RTFDC1Q9BY42 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RTFDC1Q9BY42 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
RTFDC1Q9BY42 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms