Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRF1Q92994 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
BRF1Q92994 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
BRF1Q92994 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
BRF1Q92994 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRF1Q92994 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
BRF1Q92994 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.81■□□□□ 0.6
BRF1Q92994 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.81■□□□□ 0.6
BRF1Q92994 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRF1Q92994 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.81■□□□□ 0.6
BRF1Q92994 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.81■□□□□ 0.6
BRF1Q92994 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRF1Q92994 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRF1Q92994 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRF1Q92994 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.81■□□□□ 0.6
BRF1Q92994 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
BRF1Q92994 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.81■□□□□ 0.6
BRF1Q92994 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.81■□□□□ 0.6
BRF1Q92994 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.81■□□□□ 0.6
BRF1Q92994 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRF1Q92994 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.81■□□□□ 0.6
BRF1Q92994 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.81■□□□□ 0.6
BRF1Q92994 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC18.81■□□□□ 0.6
BRF1Q92994 MIR4453-201ENST00000584019 89 ntBASIC18.81■□□□□ 0.6
BRF1Q92994 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRF1Q92994 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRF1Q92994 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
BRF1Q92994 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
BRF1Q92994 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRF1Q92994 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRF1Q92994 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRF1Q92994 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
BRF1Q92994 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRF1Q92994 AC073347.1-201ENST00000421633 2643 ntBASIC18.8■□□□□ 0.6
BRF1Q92994 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
BRF1Q92994 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC18.8■□□□□ 0.6
BRF1Q92994 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.8■□□□□ 0.6
BRF1Q92994 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.8■□□□□ 0.6
BRF1Q92994 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
BRF1Q92994 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.8■□□□□ 0.6
BRF1Q92994 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRF1Q92994 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.8■□□□□ 0.6
BRF1Q92994 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.8■□□□□ 0.6
BRF1Q92994 EEF1DP4-201ENST00000446006 880 ntBASIC18.8■□□□□ 0.6
BRF1Q92994 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.8■□□□□ 0.6
BRF1Q92994 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.8■□□□□ 0.6
BRF1Q92994 MIR6080-201ENST00000617359 66 ntBASIC18.8■□□□□ 0.6
BRF1Q92994 AP001059.3-201ENST00000619053 235 ntBASIC18.8■□□□□ 0.6
BRF1Q92994 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.8■□□□□ 0.6
BRF1Q92994 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRF1Q92994 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRF1Q92994 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRF1Q92994 AC144831.1-201ENST00000573312 2656 ntBASIC18.8■□□□□ 0.6
BRF1Q92994 AL596257.1-201ENST00000641463 2694 ntBASIC18.8■□□□□ 0.6
BRF1Q92994 AC104640.1-201ENST00000562617 2109 ntBASIC18.8■□□□□ 0.6
BRF1Q92994 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRF1Q92994 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC18.8■□□□□ 0.6
BRF1Q92994 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.8■□□□□ 0.6
BRF1Q92994 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.79■□□□□ 0.6
BRF1Q92994 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
BRF1Q92994 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
BRF1Q92994 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.79■□□□□ 0.6
BRF1Q92994 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
BRF1Q92994 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
BRF1Q92994 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
BRF1Q92994 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.79■□□□□ 0.6
BRF1Q92994 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
BRF1Q92994 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.79■□□□□ 0.6
BRF1Q92994 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.79■□□□□ 0.6
BRF1Q92994 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
BRF1Q92994 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.79■□□□□ 0.6
BRF1Q92994 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.79■□□□□ 0.6
BRF1Q92994 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.79■□□□□ 0.6
BRF1Q92994 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.79■□□□□ 0.6
BRF1Q92994 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
BRF1Q92994 MIR4313-201ENST00000580760 101 ntBASIC18.79■□□□□ 0.6
BRF1Q92994 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 AC007967.4-201ENST00000614700 386 ntBASIC18.79■□□□□ 0.6
BRF1Q92994 AL691403.2-201ENST00000618460 490 ntBASIC18.79■□□□□ 0.6
BRF1Q92994 AC126177.1-201ENST00000547829 2218 ntBASIC18.79■□□□□ 0.6
BRF1Q92994 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.79■□□□□ 0.6
BRF1Q92994 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
BRF1Q92994 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRF1Q92994 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
BRF1Q92994 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
BRF1Q92994 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.79■□□□□ 0.6
BRF1Q92994 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms