Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 NARF-206ENST00000457415 1668 ntTSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 RPL37AP1-201ENST00000412502 279 ntBASIC4.99□□□□□ -1.61
SYNE1Q8NF91 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 5S_rRNA.22-201ENST00000614916 106 ntBASIC4.99□□□□□ -1.61
SYNE1Q8NF91 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 REEP4-207ENST00000523293 913 ntTSL 3 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AC027369.6-201ENST00000525520 931 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 LINC01451-201ENST00000623792 534 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 EGFEM1P-202ENST00000431685 1563 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 CDK2AP2P3-201ENST00000422476 372 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 BTBD7P1-201ENST00000447253 1453 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 TAF8-206ENST00000472818 719 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AL390754.1-201ENST00000619088 582 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ATP5G2P4-201ENST00000442175 420 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AL359881.2-201ENST00000602973 570 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AL590560.3-201ENST00000623350 461 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms