Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 EEF1DP4-201ENST00000446006 880 ntBASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 AL512356.2-201ENST00000546955 174 ntBASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 MIR4453-201ENST00000584019 89 ntBASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 AL035456.1-201ENST00000456064 1369 ntBASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 RN7SL828P-201ENST00000607615 303 ntBASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 LINC00628-201ENST00000628516 1289 ntBASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC65Q8IXS2 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 PHKG1P2-201ENST00000457537 863 ntBASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 HLA-J-203ENST00000494367 1087 ntBASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 AL450472.2-201ENST00000603663 1156 ntBASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms