Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 MPRIPP1-201ENST00000452433 1089 ntBASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 EEF1DP1-201ENST00000585891 896 ntBASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 CYGB-203ENST00000589145 788 ntTSL 3 BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 BRF1-202ENST00000379932 884 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 AC015910.1-201ENST00000579400 975 ntBASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC19.23■□□□□ 0.67
CCDC88AQ3V6T2 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 MIR648-201ENST00000385046 94 ntBASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 KRTAP10-13P-201ENST00000412914 571 ntBASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 FNTAP2-201ENST00000430308 634 ntBASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 RN7SL769P-201ENST00000469386 295 ntBASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 AC245884.6-201ENST00000515672 1067 ntBASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 AC000095.1-201ENST00000603208 874 ntBASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 FZD10-202ENST00000539839 3282 ntBASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 AD000864.1-201ENST00000624076 2295 ntBASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 RPS3-201ENST00000278572 907 ntTSL 3 BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 FADS2-212ENST00000522639 360 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 FADS2-215ENST00000574708 385 ntTSL 3 BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC88AQ3V6T2 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 AC134407.2-201ENST00000625089 1978 ntBASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms