Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC12.96□□□□□ -0.33
CX3CL1P78423 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC12.96□□□□□ -0.33
CX3CL1P78423 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC12.96□□□□□ -0.33
CX3CL1P78423 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC12.96□□□□□ -0.33
CX3CL1P78423 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC12.96□□□□□ -0.33
CX3CL1P78423 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC12.96□□□□□ -0.33
CX3CL1P78423 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC12.96□□□□□ -0.33
CX3CL1P78423 SPCS2P4-201ENST00000436160 681 ntBASIC12.96□□□□□ -0.33
CX3CL1P78423 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC12.96□□□□□ -0.33
CX3CL1P78423 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC12.96□□□□□ -0.33
CX3CL1P78423 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC12.96□□□□□ -0.33
CX3CL1P78423 CCND1-203ENST00000536559 553 ntTSL 3 BASIC12.96□□□□□ -0.33
CX3CL1P78423 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC12.96□□□□□ -0.33
CX3CL1P78423 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC12.96□□□□□ -0.33
CX3CL1P78423 AC073389.1-201ENST00000595595 795 ntBASIC12.96□□□□□ -0.33
CX3CL1P78423 NKG7-205ENST00000600427 520 ntTSL 3 BASIC12.96□□□□□ -0.33
CX3CL1P78423 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
CX3CL1P78423 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
CX3CL1P78423 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC12.96□□□□□ -0.33
CX3CL1P78423 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC12.96□□□□□ -0.33
CX3CL1P78423 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CX3CL1P78423 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
CX3CL1P78423 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.96□□□□□ -0.34
CX3CL1P78423 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CX3CL1P78423 SLC9A7P1-201ENST00000554295 3311 ntBASIC12.96□□□□□ -0.34
CX3CL1P78423 AC022532.1-201ENST00000624563 1728 ntBASIC12.96□□□□□ -0.34
CX3CL1P78423 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
CX3CL1P78423 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
CX3CL1P78423 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC12.96□□□□□ -0.34
CX3CL1P78423 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
CX3CL1P78423 AC006058.4-201ENST00000624016 1670 ntBASIC12.96□□□□□ -0.34
CX3CL1P78423 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CX3CL1P78423 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CX3CL1P78423 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
CX3CL1P78423 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
CX3CL1P78423 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC12.95□□□□□ -0.34
CX3CL1P78423 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC12.95□□□□□ -0.34
CX3CL1P78423 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC12.95□□□□□ -0.34
CX3CL1P78423 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC12.95□□□□□ -0.34
CX3CL1P78423 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC12.95□□□□□ -0.34
CX3CL1P78423 HLA-DQB2-231ENST00000435145 2026 ntBASIC12.95□□□□□ -0.34
CX3CL1P78423 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC12.95□□□□□ -0.34
CX3CL1P78423 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC12.95□□□□□ -0.34
CX3CL1P78423 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC12.95□□□□□ -0.34
CX3CL1P78423 AL592309.1-201ENST00000443127 649 ntBASIC12.95□□□□□ -0.34
CX3CL1P78423 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CX3CL1P78423 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC12.95□□□□□ -0.34
CX3CL1P78423 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC12.95□□□□□ -0.34
CX3CL1P78423 AC098859.1-201ENST00000502915 1238 ntBASIC12.95□□□□□ -0.34
CX3CL1P78423 RNF34-208ENST00000555076 593 ntTSL 3 BASIC12.95□□□□□ -0.34
CX3CL1P78423 KRT8P23-201ENST00000560090 1207 ntBASIC12.95□□□□□ -0.34
CX3CL1P78423 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC12.95□□□□□ -0.34
CX3CL1P78423 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC12.95□□□□□ -0.34
CX3CL1P78423 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC12.95□□□□□ -0.34
CX3CL1P78423 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC12.95□□□□□ -0.34
CX3CL1P78423 AC105339.1-204ENST00000636249 355 ntBASIC12.95□□□□□ -0.34
CX3CL1P78423 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC12.95□□□□□ -0.34
CX3CL1P78423 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC12.95□□□□□ -0.34
CX3CL1P78423 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC12.95□□□□□ -0.34
CX3CL1P78423 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC12.95□□□□□ -0.34
CX3CL1P78423 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
CX3CL1P78423 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 FAM45BP-202ENST00000592932 1624 ntBASIC12.95□□□□□ -0.34
CX3CL1P78423 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
CX3CL1P78423 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CX3CL1P78423 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC12.95□□□□□ -0.34
CX3CL1P78423 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms