Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
RNF4P78317 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.81□□□□□ -0.04
RNF4P78317 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.81□□□□□ -0.04
RNF4P78317 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.81□□□□□ -0.04
RNF4P78317 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
RNF4P78317 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
RNF4P78317 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.81□□□□□ -0.04
RNF4P78317 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.81□□□□□ -0.04
RNF4P78317 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.81□□□□□ -0.04
RNF4P78317 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.81□□□□□ -0.04
RNF4P78317 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
RNF4P78317 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.81□□□□□ -0.04
RNF4P78317 OVCH1-AS1-204ENST00000641955 5529 ntBASIC14.81□□□□□ -0.04
RNF4P78317 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
RNF4P78317 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
RNF4P78317 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
RNF4P78317 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
RNF4P78317 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14.8□□□□□ -0.04
RNF4P78317 REXO1L1P-202ENST00000608646 1974 ntBASIC14.8□□□□□ -0.04
RNF4P78317 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.8□□□□□ -0.04
RNF4P78317 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.8□□□□□ -0.04
RNF4P78317 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.8□□□□□ -0.04
RNF4P78317 AZGP1P1-201ENST00000411909 902 ntBASIC14.8□□□□□ -0.04
RNF4P78317 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.8□□□□□ -0.04
RNF4P78317 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.8□□□□□ -0.04
RNF4P78317 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.8□□□□□ -0.04
RNF4P78317 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.8□□□□□ -0.04
RNF4P78317 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 MIR4745-201ENST00000577608 62 ntBASIC14.8□□□□□ -0.04
RNF4P78317 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.8□□□□□ -0.04
RNF4P78317 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.8□□□□□ -0.04
RNF4P78317 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.8□□□□□ -0.04
RNF4P78317 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.8□□□□□ -0.04
RNF4P78317 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.8□□□□□ -0.04
RNF4P78317 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.8□□□□□ -0.04
RNF4P78317 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
RNF4P78317 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 AC069224.1-201ENST00000566372 1715 ntBASIC14.8□□□□□ -0.04
RNF4P78317 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 AC011477.6-201ENST00000604980 1927 ntBASIC14.8□□□□□ -0.04
RNF4P78317 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
RNF4P78317 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.8□□□□□ -0.04
RNF4P78317 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RNF4P78317 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
RNF4P78317 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
RNF4P78317 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
RNF4P78317 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
RNF4P78317 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.79□□□□□ -0.04
RNF4P78317 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.79□□□□□ -0.04
RNF4P78317 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.79□□□□□ -0.04
RNF4P78317 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.79□□□□□ -0.04
RNF4P78317 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms