Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
HMGCS2P54868 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
HMGCS2P54868 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGCS2P54868 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.3■□□□□ 0.52
HMGCS2P54868 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 AC108725.1-201ENST00000495472 409 ntBASIC18.3■□□□□ 0.52
HMGCS2P54868 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.3■□□□□ 0.52
HMGCS2P54868 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.3■□□□□ 0.52
HMGCS2P54868 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGCS2P54868 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HMGCS2P54868 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGCS2P54868 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGCS2P54868 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
HMGCS2P54868 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGCS2P54868 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
HMGCS2P54868 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGCS2P54868 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGCS2P54868 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
HMGCS2P54868 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
HMGCS2P54868 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGCS2P54868 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGCS2P54868 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 MPV17-206ENST00000402722 827 ntTSL 3 BASIC18.29■□□□□ 0.52
HMGCS2P54868 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 AC026954.1-201ENST00000429771 1293 ntBASIC18.29■□□□□ 0.52
HMGCS2P54868 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
HMGCS2P54868 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC18.29■□□□□ 0.52
HMGCS2P54868 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC18.29■□□□□ 0.52
HMGCS2P54868 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGCS2P54868 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGCS2P54868 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.29■□□□□ 0.52
HMGCS2P54868 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGCS2P54868 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HMGCS2P54868 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS2P54868 TP73-209ENST00000603362 1668 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGCS2P54868 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS2P54868 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS2P54868 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS2P54868 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.28■□□□□ 0.52
HMGCS2P54868 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HMGCS2P54868 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS2P54868 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS2P54868 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HMGCS2P54868 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS2P54868 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGCS2P54868 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGCS2P54868 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC18.28■□□□□ 0.52
HMGCS2P54868 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGCS2P54868 AC245100.3-201ENST00000441281 285 ntBASIC18.28■□□□□ 0.52
HMGCS2P54868 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC18.28■□□□□ 0.52
HMGCS2P54868 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC18.28■□□□□ 0.52
HMGCS2P54868 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGCS2P54868 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGCS2P54868 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS2P54868 KRT90P-201ENST00000549264 1064 ntBASIC18.28■□□□□ 0.52
HMGCS2P54868 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC18.28■□□□□ 0.52
HMGCS2P54868 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
HMGCS2P54868 AC009542.2-202ENST00000619004 1067 ntBASIC18.28■□□□□ 0.52
HMGCS2P54868 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGCS2P54868 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGCS2P54868 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGCS2P54868 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
HMGCS2P54868 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS2P54868 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms