Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCN3P51790 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCN3P51790 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCN3P51790 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.48■□□□□ 0.39
CLCN3P51790 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCN3P51790 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
CLCN3P51790 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCN3P51790 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCN3P51790 OR8S1-201ENST00000310194 1080 ntBASIC17.48■□□□□ 0.39
CLCN3P51790 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
CLCN3P51790 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLCN3P51790 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.48■□□□□ 0.39
CLCN3P51790 AC104596.2-201ENST00000512793 793 ntBASIC17.48■□□□□ 0.39
CLCN3P51790 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.48■□□□□ 0.39
CLCN3P51790 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.48■□□□□ 0.39
CLCN3P51790 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCN3P51790 TMEM261P1-201ENST00000604899 340 ntBASIC17.48■□□□□ 0.39
CLCN3P51790 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCN3P51790 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCN3P51790 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLCN3P51790 AC018695.7-201ENST00000624587 2492 ntBASIC17.48■□□□□ 0.39
CLCN3P51790 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CLCN3P51790 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCN3P51790 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCN3P51790 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.48■□□□□ 0.39
CLCN3P51790 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.48■□□□□ 0.39
CLCN3P51790 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.48■□□□□ 0.39
CLCN3P51790 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCN3P51790 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CLCN3P51790 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CLCN3P51790 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.47■□□□□ 0.39
CLCN3P51790 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CLCN3P51790 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.47■□□□□ 0.39
CLCN3P51790 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CLCN3P51790 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CLCN3P51790 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CLCN3P51790 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CLCN3P51790 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.47■□□□□ 0.39
CLCN3P51790 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.47■□□□□ 0.39
CLCN3P51790 AC092552.1-201ENST00000547243 906 ntBASIC17.47■□□□□ 0.39
CLCN3P51790 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CLCN3P51790 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
CLCN3P51790 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
CLCN3P51790 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC17.47■□□□□ 0.39
CLCN3P51790 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC17.47■□□□□ 0.39
CLCN3P51790 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.47■□□□□ 0.39
CLCN3P51790 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.47■□□□□ 0.39
CLCN3P51790 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.47■□□□□ 0.39
CLCN3P51790 AC006449.5-201ENST00000610658 2098 ntBASIC17.47■□□□□ 0.39
CLCN3P51790 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CLCN3P51790 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.47■□□□□ 0.39
CLCN3P51790 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.47■□□□□ 0.39
CLCN3P51790 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.47■□□□□ 0.39
CLCN3P51790 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLCN3P51790 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLCN3P51790 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLCN3P51790 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLCN3P51790 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLCN3P51790 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLCN3P51790 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CLCN3P51790 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CLCN3P51790 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLCN3P51790 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CLCN3P51790 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CLCN3P51790 PKIG-203ENST00000372887 769 ntTSL 3 BASIC17.46■□□□□ 0.39
CLCN3P51790 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLCN3P51790 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CLCN3P51790 TMEM14DP-201ENST00000422205 345 ntBASIC17.46■□□□□ 0.39
CLCN3P51790 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.46■□□□□ 0.39
CLCN3P51790 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.46■□□□□ 0.39
CLCN3P51790 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.46■□□□□ 0.39
CLCN3P51790 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.46■□□□□ 0.39
CLCN3P51790 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLCN3P51790 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.46■□□□□ 0.39
CLCN3P51790 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.46■□□□□ 0.39
CLCN3P51790 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLCN3P51790 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC17.46■□□□□ 0.39
CLCN3P51790 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.46■□□□□ 0.39
CLCN3P51790 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.46■□□□□ 0.39
CLCN3P51790 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.46■□□□□ 0.39
CLCN3P51790 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms