Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
CDX1P47902 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC13.15□□□□□ -0.3
CDX1P47902 ACTG1P14-201ENST00000446382 1122 ntBASIC13.15□□□□□ -0.3
CDX1P47902 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC13.15□□□□□ -0.3
CDX1P47902 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC13.15□□□□□ -0.3
CDX1P47902 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC13.15□□□□□ -0.3
CDX1P47902 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC13.15□□□□□ -0.3
CDX1P47902 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC13.15□□□□□ -0.3
CDX1P47902 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 REXO1L3P-201ENST00000622202 1288 ntBASIC13.15□□□□□ -0.3
CDX1P47902 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 AC007686.3-201ENST00000619017 3487 ntBASIC13.15□□□□□ -0.3
CDX1P47902 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC13.15□□□□□ -0.3
CDX1P47902 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC13.15□□□□□ -0.3
CDX1P47902 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 LINC00528-201ENST00000600723 2160 ntBASIC13.15□□□□□ -0.3
CDX1P47902 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
CDX1P47902 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.15□□□□□ -0.31
CDX1P47902 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.15□□□□□ -0.31
CDX1P47902 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC13.15□□□□□ -0.31
CDX1P47902 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
CDX1P47902 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CDX1P47902 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
CDX1P47902 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
CDX1P47902 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CDX1P47902 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC13.14□□□□□ -0.31
CDX1P47902 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CDX1P47902 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC13.14□□□□□ -0.31
CDX1P47902 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC13.14□□□□□ -0.31
CDX1P47902 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC13.14□□□□□ -0.31
CDX1P47902 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC13.14□□□□□ -0.31
CDX1P47902 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC13.14□□□□□ -0.31
CDX1P47902 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CDX1P47902 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.31
CDX1P47902 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 NEK7-201ENST00000367383 586 ntTSL 2 BASIC13.14□□□□□ -0.31
CDX1P47902 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
CDX1P47902 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 SLC25A1P3-201ENST00000395415 828 ntBASIC13.14□□□□□ -0.31
CDX1P47902 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC13.14□□□□□ -0.31
CDX1P47902 HTR5BP-201ENST00000430851 1154 ntBASIC13.14□□□□□ -0.31
CDX1P47902 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CDX1P47902 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CDX1P47902 NMU-203ENST00000507338 658 ntTSL 3 BASIC13.14□□□□□ -0.31
CDX1P47902 YBX1P5-201ENST00000509441 847 ntBASIC13.14□□□□□ -0.31
CDX1P47902 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC13.14□□□□□ -0.31
CDX1P47902 AC107918.2-201ENST00000530817 355 ntBASIC13.14□□□□□ -0.31
CDX1P47902 AL031432.2-201ENST00000566714 459 ntBASIC13.14□□□□□ -0.31
CDX1P47902 AL928711.1-201ENST00000570165 459 ntBASIC13.14□□□□□ -0.31
CDX1P47902 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC13.14□□□□□ -0.31
CDX1P47902 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC13.14□□□□□ -0.31
CDX1P47902 AL691403.2-201ENST00000618460 490 ntBASIC13.14□□□□□ -0.31
CDX1P47902 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 CICP24-201ENST00000605464 2705 ntBASIC13.14□□□□□ -0.31
CDX1P47902 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
CDX1P47902 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CDX1P47902 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CDX1P47902 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms