Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AL161670.2-201ENST00000557650 1227 ntBASIC17.56■□□□□ 0.4
HTTP42858 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HTTP42858 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HTTP42858 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HTTP42858 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HTTP42858 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HTTP42858 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HTTP42858 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HTTP42858 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.56■□□□□ 0.4
HTTP42858 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.56■□□□□ 0.4
HTTP42858 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HTTP42858 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HTTP42858 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.56■□□□□ 0.4
HTTP42858 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.56■□□□□ 0.4
HTTP42858 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC17.56■□□□□ 0.4
HTTP42858 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
HTTP42858 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.56■□□□□ 0.4
HTTP42858 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.56■□□□□ 0.4
HTTP42858 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HTTP42858 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.55■□□□□ 0.4
HTTP42858 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.55■□□□□ 0.4
HTTP42858 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HTTP42858 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HTTP42858 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.55■□□□□ 0.4
HTTP42858 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HTTP42858 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.55■□□□□ 0.4
HTTP42858 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC17.55■□□□□ 0.4
HTTP42858 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HTTP42858 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC17.55■□□□□ 0.4
HTTP42858 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HTTP42858 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HTTP42858 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
HTTP42858 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC17.55■□□□□ 0.4
HTTP42858 KRT18P25-201ENST00000508931 1278 ntBASIC17.55■□□□□ 0.4
HTTP42858 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC17.55■□□□□ 0.4
HTTP42858 AC097359.3-201ENST00000603982 1210 ntBASIC17.55■□□□□ 0.4
HTTP42858 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.55■□□□□ 0.4
HTTP42858 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HTTP42858 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HTTP42858 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.55■□□□□ 0.4
HTTP42858 AC005915.1-201ENST00000624912 2018 ntBASIC17.55■□□□□ 0.4
HTTP42858 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HTTP42858 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HTTP42858 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.55■□□□□ 0.4
HTTP42858 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HTTP42858 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HTTP42858 CRCP-204ENST00000398684 492 ntTSL 2 BASIC17.55■□□□□ 0.4
HTTP42858 CYP51A1P3-201ENST00000400072 1428 ntBASIC17.55■□□□□ 0.4
HTTP42858 SERF2-206ENST00000409291 807 ntTSL 3 BASIC17.55■□□□□ 0.4
HTTP42858 AP001582.1-201ENST00000525856 295 ntBASIC17.55■□□□□ 0.4
HTTP42858 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HTTP42858 AC079328.2-201ENST00000561241 3354 ntBASIC17.55■□□□□ 0.4
HTTP42858 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HTTP42858 BNIP3P13-201ENST00000599968 566 ntBASIC17.55■□□□□ 0.4
HTTP42858 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC17.55■□□□□ 0.4
HTTP42858 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HTTP42858 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.55■□□□□ 0.4
HTTP42858 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.55■□□□□ 0.4
HTTP42858 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HTTP42858 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HTTP42858 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HTTP42858 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.54■□□□□ 0.4
HTTP42858 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HTTP42858 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.54■□□□□ 0.4
HTTP42858 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC17.54■□□□□ 0.4
HTTP42858 RGS5-214ENST00000429865 754 ntTSL 3 BASIC17.54■□□□□ 0.4
HTTP42858 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC17.54■□□□□ 0.4
HTTP42858 AC132192.2-201ENST00000596206 1147 ntBASIC17.54■□□□□ 0.4
HTTP42858 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC17.54■□□□□ 0.4
HTTP42858 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC17.54■□□□□ 0.4
HTTP42858 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.54■□□□□ 0.4
HTTP42858 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HTTP42858 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HTTP42858 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HTTP42858 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
HTTP42858 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HTTP42858 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.54■□□□□ 0.4
HTTP42858 PGAM1P5-201ENST00000548011 764 ntBASIC17.54■□□□□ 0.4
HTTP42858 AC243562.2-201ENST00000561247 970 ntBASIC17.54■□□□□ 0.4
HTTP42858 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.54■□□□□ 0.4
HTTP42858 AL805961.1-201ENST00000642026 753 ntBASIC17.54■□□□□ 0.4
HTTP42858 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HTTP42858 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HTTP42858 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HTTP42858 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HTTP42858 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.54■□□□□ 0.4
HTTP42858 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HTTP42858 Z97180.1-201ENST00000445173 988 ntBASIC17.54■□□□□ 0.4
HTTP42858 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.54■□□□□ 0.4
HTTP42858 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC17.54■□□□□ 0.4
HTTP42858 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
HTTP42858 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HTTP42858 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HTTP42858 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.54■□□□□ 0.4
HTTP42858 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC17.53■□□□□ 0.4
HTTP42858 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC17.53■□□□□ 0.4
HTTP42858 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.53■□□□□ 0.4
HTTP42858 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HTTP42858 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
HTTP42858 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms