Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC12.39□□□□□ -0.43
HOXD3P31249 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
HOXD3P31249 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC12.39□□□□□ -0.43
HOXD3P31249 GNAQP1-201ENST00000444815 1067 ntBASIC12.39□□□□□ -0.43
HOXD3P31249 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC12.39□□□□□ -0.43
HOXD3P31249 AC009477.1-201ENST00000452936 217 ntBASIC12.39□□□□□ -0.43
HOXD3P31249 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC12.39□□□□□ -0.43
HOXD3P31249 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC12.39□□□□□ -0.43
HOXD3P31249 AC009407.1-201ENST00000568958 598 ntBASIC12.39□□□□□ -0.43
HOXD3P31249 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC12.39□□□□□ -0.43
HOXD3P31249 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC12.39□□□□□ -0.43
HOXD3P31249 AL359881.2-201ENST00000602973 570 ntBASIC12.39□□□□□ -0.43
HOXD3P31249 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC12.39□□□□□ -0.43
HOXD3P31249 WT1-209ENST00000530998 2421 ntTSL 2 BASIC12.39□□□□□ -0.43
HOXD3P31249 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC12.39□□□□□ -0.43
HOXD3P31249 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC12.39□□□□□ -0.43
HOXD3P31249 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
HOXD3P31249 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 AC126755.1-201ENST00000525846 6405 ntBASIC12.38□□□□□ -0.43
HOXD3P31249 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 AC087499.5-201ENST00000452760 1342 ntBASIC12.38□□□□□ -0.43
HOXD3P31249 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXD3P31249 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXD3P31249 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 GCK-209ENST00000616242 2260 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXD3P31249 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
HOXD3P31249 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
HOXD3P31249 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC12.38□□□□□ -0.43
HOXD3P31249 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC12.38□□□□□ -0.43
HOXD3P31249 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXD3P31249 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC12.38□□□□□ -0.43
HOXD3P31249 AC135586.1-201ENST00000539323 574 ntBASIC12.38□□□□□ -0.43
HOXD3P31249 NOP2-220ENST00000545915 630 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 AL079307.3-201ENST00000556114 283 ntBASIC12.38□□□□□ -0.43
HOXD3P31249 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 AL133215.2-201ENST00000609242 977 ntBASIC12.38□□□□□ -0.43
HOXD3P31249 RNA5-8SN1-201ENST00000610460 153 ntBASIC12.38□□□□□ -0.43
HOXD3P31249 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC12.38□□□□□ -0.43
HOXD3P31249 RNA5-8SN5-202ENST00000612463 153 ntBASIC12.38□□□□□ -0.43
HOXD3P31249 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 RNA5-8SN4-201ENST00000613359 153 ntBASIC12.38□□□□□ -0.43
HOXD3P31249 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC12.38□□□□□ -0.43
HOXD3P31249 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC12.38□□□□□ -0.43
HOXD3P31249 RNA5-8SN5-201ENST00000619471 153 ntBASIC12.38□□□□□ -0.43
HOXD3P31249 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC12.38□□□□□ -0.43
HOXD3P31249 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
HOXD3P31249 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
HOXD3P31249 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
HOXD3P31249 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXD3P31249 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXD3P31249 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
HOXD3P31249 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
HOXD3P31249 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXD3P31249 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC12.38□□□□□ -0.43
HOXD3P31249 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 133.6 ms