Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
COL2A1P02458 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
COL2A1P02458 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC18.35■□□□□ 0.53
COL2A1P02458 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
COL2A1P02458 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC18.35■□□□□ 0.53
COL2A1P02458 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 FAM86HP-204ENST00000513466 959 ntBASIC18.35■□□□□ 0.53
COL2A1P02458 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC18.35■□□□□ 0.53
COL2A1P02458 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC18.35■□□□□ 0.53
COL2A1P02458 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 AC009542.2-202ENST00000619004 1067 ntBASIC18.35■□□□□ 0.53
COL2A1P02458 PRSS30P-206ENST00000641773 873 ntBASIC18.35■□□□□ 0.53
COL2A1P02458 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.35■□□□□ 0.53
COL2A1P02458 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC18.35■□□□□ 0.53
COL2A1P02458 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
COL2A1P02458 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.35■□□□□ 0.53
COL2A1P02458 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.35■□□□□ 0.53
COL2A1P02458 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC18.35■□□□□ 0.53
COL2A1P02458 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
COL2A1P02458 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
COL2A1P02458 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
COL2A1P02458 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC18.34■□□□□ 0.53
COL2A1P02458 OLR1-203ENST00000432556 950 ntTSL 2 BASIC18.34■□□□□ 0.53
COL2A1P02458 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC18.34■□□□□ 0.53
COL2A1P02458 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC18.34■□□□□ 0.53
COL2A1P02458 RIT1-205ENST00000539040 919 ntTSL 2 BASIC18.34■□□□□ 0.53
COL2A1P02458 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC18.34■□□□□ 0.53
COL2A1P02458 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC18.34■□□□□ 0.53
COL2A1P02458 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC18.34■□□□□ 0.53
COL2A1P02458 MIR4538-201ENST00000581377 78 ntBASIC18.34■□□□□ 0.53
COL2A1P02458 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC18.34■□□□□ 0.53
COL2A1P02458 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.34■□□□□ 0.53
COL2A1P02458 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.34■□□□□ 0.53
COL2A1P02458 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.34■□□□□ 0.53
COL2A1P02458 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC18.34■□□□□ 0.53
COL2A1P02458 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
COL2A1P02458 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL2A1P02458 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.33■□□□□ 0.53
COL2A1P02458 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL2A1P02458 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL2A1P02458 AC112504.1-201ENST00000623415 1841 ntBASIC18.33■□□□□ 0.53
COL2A1P02458 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC18.33■□□□□ 0.53
COL2A1P02458 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC18.33■□□□□ 0.53
COL2A1P02458 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC18.33■□□□□ 0.53
COL2A1P02458 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC18.33■□□□□ 0.53
COL2A1P02458 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC18.33■□□□□ 0.53
COL2A1P02458 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC18.33■□□□□ 0.53
COL2A1P02458 AHRR-211ENST00000515206 462 ntTSL 5 BASIC18.33■□□□□ 0.53
COL2A1P02458 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC18.33■□□□□ 0.53
COL2A1P02458 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC18.33■□□□□ 0.53
COL2A1P02458 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL2A1P02458 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC18.33■□□□□ 0.53
COL2A1P02458 AC138951.2-201ENST00000623455 1161 ntBASIC18.33■□□□□ 0.53
COL2A1P02458 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC18.33■□□□□ 0.53
COL2A1P02458 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC18.33■□□□□ 0.53
COL2A1P02458 AC068587.10-201ENST00000641210 219 ntBASIC18.33■□□□□ 0.53
COL2A1P02458 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.53
COL2A1P02458 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL2A1P02458 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
COL2A1P02458 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL2A1P02458 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL2A1P02458 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL2A1P02458 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL2A1P02458 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL2A1P02458 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
COL2A1P02458 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
COL2A1P02458 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL2A1P02458 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms