Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.66■□□□□ 0.1
SIX3O95343 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.66■□□□□ 0.1
SIX3O95343 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.66■□□□□ 0.1
SIX3O95343 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.66■□□□□ 0.1
SIX3O95343 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.66■□□□□ 0.1
SIX3O95343 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.66■□□□□ 0.1
SIX3O95343 AC243562.1-201ENST00000560672 389 ntBASIC15.66■□□□□ 0.1
SIX3O95343 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.66■□□□□ 0.1
SIX3O95343 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.66■□□□□ 0.1
SIX3O95343 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.66■□□□□ 0.1
SIX3O95343 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.66■□□□□ 0.1
SIX3O95343 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
SIX3O95343 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
SIX3O95343 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SIX3O95343 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.66■□□□□ 0.1
SIX3O95343 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
SIX3O95343 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 TMBIM7P-203ENST00000641617 1718 ntBASIC15.65■□□□□ 0.1
SIX3O95343 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
SIX3O95343 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SIX3O95343 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
SIX3O95343 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.65■□□□□ 0.1
SIX3O95343 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.65■□□□□ 0.1
SIX3O95343 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 TNRC18P2-201ENST00000417666 2714 ntBASIC15.65■□□□□ 0.1
SIX3O95343 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.65■□□□□ 0.1
SIX3O95343 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SIX3O95343 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.65■□□□□ 0.1
SIX3O95343 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.65■□□□□ 0.1
SIX3O95343 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.65■□□□□ 0.1
SIX3O95343 AC024267.1-201ENST00000582320 895 ntBASIC15.65■□□□□ 0.1
SIX3O95343 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.65■□□□□ 0.1
SIX3O95343 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.65■□□□□ 0.1
SIX3O95343 GPALPP1-207ENST00000611650 899 ntBASIC15.65■□□□□ 0.1
SIX3O95343 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.65■□□□□ 0.1
SIX3O95343 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.65■□□□□ 0.1
SIX3O95343 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 AL136982.4-201ENST00000437689 1740 ntBASIC15.65■□□□□ 0.1
SIX3O95343 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SIX3O95343 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
SIX3O95343 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
SIX3O95343 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.64■□□□□ 0.09
SIX3O95343 AC138035.3-201ENST00000622706 2791 ntBASIC15.64■□□□□ 0.09
SIX3O95343 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SIX3O95343 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 NORAD-201ENST00000565493 5339 ntBASIC15.64■□□□□ 0.09
SIX3O95343 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
SIX3O95343 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
SIX3O95343 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 KRT8P48-201ENST00000515599 1220 ntBASIC15.64■□□□□ 0.09
SIX3O95343 RNA5SP410-201ENST00000516285 106 ntBASIC15.64■□□□□ 0.09
SIX3O95343 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.64■□□□□ 0.09
SIX3O95343 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.64■□□□□ 0.09
SIX3O95343 AC243562.2-201ENST00000561247 970 ntBASIC15.64■□□□□ 0.09
SIX3O95343 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
SIX3O95343 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
SIX3O95343 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
SIX3O95343 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
SIX3O95343 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.64■□□□□ 0.09
SIX3O95343 AC023157.3-201ENST00000619086 2088 ntBASIC15.64■□□□□ 0.09
SIX3O95343 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.64■□□□□ 0.09
SIX3O95343 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SIX3O95343 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.64■□□□□ 0.09
SIX3O95343 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms