Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.87■□□□□ 0.45
MSH4O15457 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
MSH4O15457 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
MSH4O15457 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
MSH4O15457 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.87■□□□□ 0.45
MSH4O15457 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
MSH4O15457 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH4O15457 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.86■□□□□ 0.45
MSH4O15457 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
MSH4O15457 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
MSH4O15457 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC17.86■□□□□ 0.45
MSH4O15457 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
MSH4O15457 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.86■□□□□ 0.45
MSH4O15457 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH4O15457 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH4O15457 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH4O15457 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH4O15457 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
MSH4O15457 TIMM17BP1-201ENST00000545713 516 ntBASIC17.86■□□□□ 0.45
MSH4O15457 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH4O15457 AC023310.3-201ENST00000557027 670 ntBASIC17.86■□□□□ 0.45
MSH4O15457 AC100756.1-201ENST00000562736 682 ntBASIC17.86■□□□□ 0.45
MSH4O15457 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.86■□□□□ 0.45
MSH4O15457 AC138749.3-201ENST00000567691 622 ntBASIC17.86■□□□□ 0.45
MSH4O15457 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.86■□□□□ 0.45
MSH4O15457 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.86■□□□□ 0.45
MSH4O15457 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 AC116165.1-201ENST00000611806 668 ntBASIC17.86■□□□□ 0.45
MSH4O15457 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
MSH4O15457 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.86■□□□□ 0.45
MSH4O15457 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.86■□□□□ 0.45
MSH4O15457 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH4O15457 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH4O15457 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH4O15457 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH4O15457 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH4O15457 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH4O15457 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.85■□□□□ 0.45
MSH4O15457 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
MSH4O15457 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH4O15457 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSH4O15457 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH4O15457 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH4O15457 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH4O15457 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
MSH4O15457 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSH4O15457 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
MSH4O15457 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
MSH4O15457 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
MSH4O15457 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
MSH4O15457 AL035633.1-201ENST00000406139 838 ntBASIC17.85■□□□□ 0.45
MSH4O15457 PIN1P1-201ENST00000412108 996 ntBASIC17.85■□□□□ 0.45
MSH4O15457 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.85■□□□□ 0.45
MSH4O15457 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH4O15457 MEIS3P1-201ENST00000495167 958 ntBASIC17.85■□□□□ 0.45
MSH4O15457 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH4O15457 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSH4O15457 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.85■□□□□ 0.45
MSH4O15457 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.85■□□□□ 0.45
MSH4O15457 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.85■□□□□ 0.45
MSH4O15457 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
MSH4O15457 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC17.85■□□□□ 0.45
MSH4O15457 AC007541.1-201ENST00000570282 1469 ntBASIC17.85■□□□□ 0.45
MSH4O15457 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.85■□□□□ 0.45
MSH4O15457 AL132655.2-201ENST00000596276 594 ntBASIC17.85■□□□□ 0.45
MSH4O15457 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSH4O15457 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.85■□□□□ 0.45
MSH4O15457 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.85■□□□□ 0.45
MSH4O15457 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
MSH4O15457 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
MSH4O15457 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH4O15457 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH4O15457 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.84■□□□□ 0.45
MSH4O15457 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.84■□□□□ 0.45
MSH4O15457 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
MSH4O15457 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.84■□□□□ 0.45
MSH4O15457 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms