Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 AC018845.2-201ENST00000568326 409 ntBASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 AC005089.1-201ENST00000619486 2241 ntBASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 AC026396.1-201ENST00000419388 421 ntBASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 AL109954.1-202ENST00000564051 2148 ntBASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 AL009183.1-201ENST00000603760 355 ntBASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 AC120114.3-201ENST00000611923 658 ntBASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC39Q9UFE4 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 KRT18P2-201ENST00000447938 1258 ntBASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 AC109635.5-201ENST00000533593 962 ntBASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 KRT19P2-202ENST00000557173 1012 ntBASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CCDC39Q9UFE4 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC39Q9UFE4 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC39Q9UFE4 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC39Q9UFE4 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC18.58■□□□□ 0.57
CCDC39Q9UFE4 GSN-203ENST00000373808 2664 ntTSL 2 BASIC18.58■□□□□ 0.57
CCDC39Q9UFE4 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC39Q9UFE4 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC39Q9UFE4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
CCDC39Q9UFE4 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.58■□□□□ 0.57
CCDC39Q9UFE4 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms