Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM56Q9BRZ2 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 KRT18P34-201ENST00000488218 1270 ntBASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 KRT18P58-201ENST00000527480 1120 ntBASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM56Q9BRZ2 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.22
TRIM56Q9BRZ2 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 AL138918.1-201ENST00000568306 659 ntBASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 AC136621.1-201ENST00000624017 2304 ntBASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
TRIM56Q9BRZ2 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TRIM56Q9BRZ2 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM56Q9BRZ2 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM56Q9BRZ2 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM56Q9BRZ2 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
TRIM56Q9BRZ2 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM56Q9BRZ2 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
TRIM56Q9BRZ2 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms