Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 AL359711.2-201ENST00000563105 872 ntBASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 BRI3BPP1-201ENST00000594224 787 ntBASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.95■□□□□ 0.3
PAAF1Q9BRP4 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 AC006449.5-201ENST00000610658 2098 ntBASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 AC007389.4-201ENST00000454674 793 ntBASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 RAB43P1-201ENST00000561790 589 ntBASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 AC106886.1-201ENST00000568660 600 ntBASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
PAAF1Q9BRP4 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 MIR1909-201ENST00000411312 80 ntBASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 AL442647.2-201ENST00000429864 857 ntBASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 CROCCP4-201ENST00000457096 498 ntBASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 AL512343.1-201ENST00000605837 169 ntBASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 MTHFR-217ENST00000641820 1569 ntBASIC16.93■□□□□ 0.3
PAAF1Q9BRP4 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms