Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LRCH3Q96II8 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRCH3Q96II8 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRCH3Q96II8 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LRCH3Q96II8 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LRCH3Q96II8 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.24■□□□□ 0.35
LRCH3Q96II8 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.24■□□□□ 0.35
LRCH3Q96II8 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LRCH3Q96II8 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LRCH3Q96II8 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.24■□□□□ 0.35
LRCH3Q96II8 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRCH3Q96II8 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRCH3Q96II8 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
LRCH3Q96II8 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRCH3Q96II8 AL671710.1-201ENST00000610245 2349 ntBASIC17.23■□□□□ 0.35
LRCH3Q96II8 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRCH3Q96II8 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRCH3Q96II8 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 KRTAP4-4-201ENST00000390661 1081 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 C1QBPP1-201ENST00000400117 770 ntBASIC17.23■□□□□ 0.35
LRCH3Q96II8 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRCH3Q96II8 PTPA-218ENST00000435132 618 ntTSL 2 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRCH3Q96II8 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 NKG7-204ENST00000595217 816 ntTSL 2 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 AC005252.2-201ENST00000624630 1141 ntBASIC17.23■□□□□ 0.35
LRCH3Q96II8 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRCH3Q96II8 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 OR6D1P-202ENST00000641007 5290 ntBASIC17.23■□□□□ 0.35
LRCH3Q96II8 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRCH3Q96II8 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRCH3Q96II8 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRCH3Q96II8 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRCH3Q96II8 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRCH3Q96II8 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRCH3Q96II8 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
LRCH3Q96II8 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRCH3Q96II8 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRCH3Q96II8 CROCCP2-202ENST00000412962 2773 ntBASIC17.23■□□□□ 0.35
LRCH3Q96II8 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.22■□□□□ 0.35
LRCH3Q96II8 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 TNFRSF10A-AS1-201ENST00000518308 637 ntTSL 3 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 RN7SL736P-201ENST00000613111 269 ntBASIC17.22■□□□□ 0.35
LRCH3Q96II8 AP000346.4-201ENST00000614827 381 ntBASIC17.22■□□□□ 0.35
LRCH3Q96II8 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 AL021920.2-201ENST00000624828 1351 ntBASIC17.22■□□□□ 0.35
LRCH3Q96II8 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRCH3Q96II8 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.22■□□□□ 0.35
LRCH3Q96II8 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms