Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
BRF1Q92994 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC18.84■□□□□ 0.61
BRF1Q92994 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.84■□□□□ 0.61
BRF1Q92994 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.84■□□□□ 0.61
BRF1Q92994 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.84■□□□□ 0.61
BRF1Q92994 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC18.84■□□□□ 0.61
BRF1Q92994 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.84■□□□□ 0.61
BRF1Q92994 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.84■□□□□ 0.61
BRF1Q92994 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
BRF1Q92994 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
BRF1Q92994 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
BRF1Q92994 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 DNAJB3-202ENST00000449667 1266 ntBASIC18.84■□□□□ 0.61
BRF1Q92994 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
BRF1Q92994 SNHG9-202ENST00000564014 471 ntBASIC18.84■□□□□ 0.61
BRF1Q92994 AC105021.1-202ENST00000570572 669 ntBASIC18.84■□□□□ 0.61
BRF1Q92994 AC003101.2-201ENST00000612557 442 ntBASIC18.84■□□□□ 0.61
BRF1Q92994 AC023511.2-201ENST00000618803 211 ntBASIC18.84■□□□□ 0.61
BRF1Q92994 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.84■□□□□ 0.61
BRF1Q92994 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
BRF1Q92994 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
BRF1Q92994 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
BRF1Q92994 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.84■□□□□ 0.61
BRF1Q92994 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.84■□□□□ 0.61
BRF1Q92994 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRF1Q92994 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.84■□□□□ 0.61
BRF1Q92994 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
BRF1Q92994 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
BRF1Q92994 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
BRF1Q92994 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
BRF1Q92994 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.83■□□□□ 0.61
BRF1Q92994 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
BRF1Q92994 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
BRF1Q92994 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
BRF1Q92994 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
BRF1Q92994 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
BRF1Q92994 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.83■□□□□ 0.61
BRF1Q92994 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.83■□□□□ 0.6
BRF1Q92994 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
BRF1Q92994 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
BRF1Q92994 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.83■□□□□ 0.6
BRF1Q92994 AL353705.2-201ENST00000428243 662 ntBASIC18.83■□□□□ 0.6
BRF1Q92994 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
BRF1Q92994 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
BRF1Q92994 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.83■□□□□ 0.6
BRF1Q92994 AC026979.3-201ENST00000607315 403 ntBASIC18.83■□□□□ 0.6
BRF1Q92994 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
BRF1Q92994 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
BRF1Q92994 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BRF1Q92994 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BRF1Q92994 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BRF1Q92994 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
BRF1Q92994 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BRF1Q92994 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BRF1Q92994 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
BRF1Q92994 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
BRF1Q92994 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BRF1Q92994 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.83■□□□□ 0.6
BRF1Q92994 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BRF1Q92994 KRT8P37-201ENST00000451609 1420 ntBASIC18.83■□□□□ 0.6
BRF1Q92994 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
BRF1Q92994 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
BRF1Q92994 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRF1Q92994 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
BRF1Q92994 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.82■□□□□ 0.6
BRF1Q92994 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRF1Q92994 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRF1Q92994 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC18.82■□□□□ 0.6
BRF1Q92994 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.82■□□□□ 0.6
BRF1Q92994 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRF1Q92994 AC092127.1-201ENST00000567093 3455 ntBASIC18.82■□□□□ 0.6
BRF1Q92994 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
BRF1Q92994 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
BRF1Q92994 MIR1233-2-201ENST00000408138 82 ntBASIC18.82■□□□□ 0.6
BRF1Q92994 MIR1233-1-201ENST00000408722 82 ntBASIC18.82■□□□□ 0.6
BRF1Q92994 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.82■□□□□ 0.6
BRF1Q92994 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.82■□□□□ 0.6
BRF1Q92994 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.82■□□□□ 0.6
BRF1Q92994 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRF1Q92994 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.82■□□□□ 0.6
BRF1Q92994 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.82■□□□□ 0.6
BRF1Q92994 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
BRF1Q92994 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.82■□□□□ 0.6
BRF1Q92994 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRF1Q92994 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.82■□□□□ 0.6
BRF1Q92994 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRF1Q92994 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms