Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.27■□□□□ 0.2
USP39Q53GS9 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.27■□□□□ 0.2
USP39Q53GS9 AL139010.1-201ENST00000454878 894 ntBASIC16.27■□□□□ 0.2
USP39Q53GS9 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
USP39Q53GS9 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
USP39Q53GS9 AC023310.3-201ENST00000557027 670 ntBASIC16.27■□□□□ 0.2
USP39Q53GS9 AC100756.1-201ENST00000562736 682 ntBASIC16.27■□□□□ 0.2
USP39Q53GS9 AC138749.3-201ENST00000567691 622 ntBASIC16.27■□□□□ 0.2
USP39Q53GS9 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16.27■□□□□ 0.2
USP39Q53GS9 AC116165.1-201ENST00000611806 668 ntBASIC16.27■□□□□ 0.2
USP39Q53GS9 AL109936.8-201ENST00000641772 604 ntBASIC16.27■□□□□ 0.2
USP39Q53GS9 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
USP39Q53GS9 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.27■□□□□ 0.2
USP39Q53GS9 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
USP39Q53GS9 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
USP39Q53GS9 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
USP39Q53GS9 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
USP39Q53GS9 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
USP39Q53GS9 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
USP39Q53GS9 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
USP39Q53GS9 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
USP39Q53GS9 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.27■□□□□ 0.19
USP39Q53GS9 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
USP39Q53GS9 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.27■□□□□ 0.19
USP39Q53GS9 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.27■□□□□ 0.19
USP39Q53GS9 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
USP39Q53GS9 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.27■□□□□ 0.19
USP39Q53GS9 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
USP39Q53GS9 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.27■□□□□ 0.19
USP39Q53GS9 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
USP39Q53GS9 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
USP39Q53GS9 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
USP39Q53GS9 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.26■□□□□ 0.19
USP39Q53GS9 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
USP39Q53GS9 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.26■□□□□ 0.19
USP39Q53GS9 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.26■□□□□ 0.19
USP39Q53GS9 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
USP39Q53GS9 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.26■□□□□ 0.19
USP39Q53GS9 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
USP39Q53GS9 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.26■□□□□ 0.19
USP39Q53GS9 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.26■□□□□ 0.19
USP39Q53GS9 AC007389.4-201ENST00000454674 793 ntBASIC16.26■□□□□ 0.19
USP39Q53GS9 ELK1P1-201ENST00000485699 580 ntBASIC16.26■□□□□ 0.19
USP39Q53GS9 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.26■□□□□ 0.19
USP39Q53GS9 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.26■□□□□ 0.19
USP39Q53GS9 TIMM17BP1-201ENST00000545713 516 ntBASIC16.26■□□□□ 0.19
USP39Q53GS9 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.26■□□□□ 0.19
USP39Q53GS9 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC16.26■□□□□ 0.19
USP39Q53GS9 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.26■□□□□ 0.19
USP39Q53GS9 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
USP39Q53GS9 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.26■□□□□ 0.19
USP39Q53GS9 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
USP39Q53GS9 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.26■□□□□ 0.19
USP39Q53GS9 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
USP39Q53GS9 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USP39Q53GS9 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
USP39Q53GS9 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC16.25■□□□□ 0.19
USP39Q53GS9 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
USP39Q53GS9 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP39Q53GS9 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.25■□□□□ 0.19
USP39Q53GS9 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.25■□□□□ 0.19
USP39Q53GS9 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP39Q53GS9 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP39Q53GS9 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.25■□□□□ 0.19
USP39Q53GS9 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP39Q53GS9 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP39Q53GS9 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.25■□□□□ 0.19
USP39Q53GS9 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP39Q53GS9 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
USP39Q53GS9 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.25■□□□□ 0.19
USP39Q53GS9 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.25■□□□□ 0.19
USP39Q53GS9 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP39Q53GS9 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.25■□□□□ 0.19
USP39Q53GS9 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.25■□□□□ 0.19
USP39Q53GS9 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
USP39Q53GS9 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
USP39Q53GS9 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.25■□□□□ 0.19
USP39Q53GS9 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.25■□□□□ 0.19
USP39Q53GS9 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.25■□□□□ 0.19
USP39Q53GS9 CTBP2P3-201ENST00000585629 1255 ntBASIC16.25■□□□□ 0.19
USP39Q53GS9 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC16.25■□□□□ 0.19
USP39Q53GS9 AL512343.1-201ENST00000605837 169 ntBASIC16.25■□□□□ 0.19
USP39Q53GS9 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms