Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
SHROOM1Q2M3G4 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 MGST3-203ENST00000367885 680 ntTSL 2 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 BCRP2-202ENST00000447763 634 ntBASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 BCRP6-201ENST00000510112 632 ntBASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 BCRP7-201ENST00000511549 544 ntBASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 AC233724.13-201ENST00000598383 410 ntBASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 RPS24-214ENST00000613865 538 ntTSL 5 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM1Q2M3G4 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SHROOM1Q2M3G4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SHROOM1Q2M3G4 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.52■□□□□ 0.55
SHROOM1Q2M3G4 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SHROOM1Q2M3G4 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SHROOM1Q2M3G4 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SHROOM1Q2M3G4 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 AL121723.1-201ENST00000445194 1519 ntBASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 AL596087.1-201ENST00000400979 1969 ntBASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM1Q2M3G4 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 ACTG1P3-201ENST00000431775 1114 ntBASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 CTBP2P5-201ENST00000454986 1264 ntBASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 AC022494.1-201ENST00000466044 728 ntBASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 USB1-203ENST00000539737 1212 ntTSL 2 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 AC120045.2-201ENST00000567334 178 ntBASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 AC005252.2-201ENST00000624630 1141 ntBASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms