Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CX3CL1P78423 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CX3CL1P78423 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CX3CL1P78423 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC12.98□□□□□ -0.33
CX3CL1P78423 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC12.98□□□□□ -0.33
CX3CL1P78423 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
CX3CL1P78423 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CX3CL1P78423 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC12.98□□□□□ -0.33
CX3CL1P78423 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CX3CL1P78423 C1R-202ENST00000536053 2347 ntTSL 2 BASIC12.97□□□□□ -0.33
CX3CL1P78423 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC12.97□□□□□ -0.33
CX3CL1P78423 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 SP100-205ENST00000409824 1802 ntTSL 5 BASIC12.97□□□□□ -0.33
CX3CL1P78423 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CX3CL1P78423 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC12.97□□□□□ -0.33
CX3CL1P78423 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC12.97□□□□□ -0.33
CX3CL1P78423 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CX3CL1P78423 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
CX3CL1P78423 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC12.97□□□□□ -0.33
CX3CL1P78423 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC12.97□□□□□ -0.33
CX3CL1P78423 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 YBX1P5-201ENST00000509441 847 ntBASIC12.97□□□□□ -0.33
CX3CL1P78423 IGHV3-62-201ENST00000520057 340 ntBASIC12.97□□□□□ -0.33
CX3CL1P78423 AC105233.2-201ENST00000523697 349 ntBASIC12.97□□□□□ -0.33
CX3CL1P78423 AF228730.5-201ENST00000530288 346 ntBASIC12.97□□□□□ -0.33
CX3CL1P78423 PUS1-205ENST00000535067 838 ntTSL 3 BASIC12.97□□□□□ -0.33
CX3CL1P78423 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC12.97□□□□□ -0.33
CX3CL1P78423 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC12.97□□□□□ -0.33
CX3CL1P78423 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC12.97□□□□□ -0.33
CX3CL1P78423 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.97□□□□□ -0.33
CX3CL1P78423 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC12.97□□□□□ -0.33
CX3CL1P78423 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC12.97□□□□□ -0.33
CX3CL1P78423 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC12.97□□□□□ -0.33
CX3CL1P78423 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CX3CL1P78423 AL589702.1-201ENST00000641229 1509 ntBASIC12.97□□□□□ -0.33
CX3CL1P78423 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC12.97□□□□□ -0.33
CX3CL1P78423 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CX3CL1P78423 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
CX3CL1P78423 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CL1P78423 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC12.96□□□□□ -0.33
CX3CL1P78423 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 AL365209.1-201ENST00000624418 6473 ntBASIC12.96□□□□□ -0.33
CX3CL1P78423 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
CX3CL1P78423 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC12.96□□□□□ -0.33
CX3CL1P78423 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.96□□□□□ -0.33
CX3CL1P78423 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CX3CL1P78423 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CX3CL1P78423 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
CX3CL1P78423 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
CX3CL1P78423 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC12.96□□□□□ -0.33
CX3CL1P78423 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC12.96□□□□□ -0.33
CX3CL1P78423 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
CX3CL1P78423 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC12.96□□□□□ -0.33
CX3CL1P78423 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CL1P78423 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
CX3CL1P78423 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC12.96□□□□□ -0.33
CX3CL1P78423 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms