Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.51■□□□□ 0.39
CLCN3P51790 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLCN3P51790 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CLCN3P51790 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLCN3P51790 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CLCN3P51790 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
CLCN3P51790 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.51■□□□□ 0.39
CLCN3P51790 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.51■□□□□ 0.39
CLCN3P51790 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLCN3P51790 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.51■□□□□ 0.39
CLCN3P51790 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.5■□□□□ 0.39
CLCN3P51790 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CLCN3P51790 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CLCN3P51790 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.5■□□□□ 0.39
CLCN3P51790 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.5■□□□□ 0.39
CLCN3P51790 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 AL607033.1-201ENST00000623900 1599 ntBASIC17.5■□□□□ 0.39
CLCN3P51790 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.5■□□□□ 0.39
CLCN3P51790 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.5■□□□□ 0.39
CLCN3P51790 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.5■□□□□ 0.39
CLCN3P51790 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CLCN3P51790 AC244107.1-201ENST00000442033 332 ntBASIC17.5■□□□□ 0.39
CLCN3P51790 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.5■□□□□ 0.39
CLCN3P51790 USP40-206ENST00000443711 628 ntTSL 2 BASIC17.5■□□□□ 0.39
CLCN3P51790 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 RN7SL837P-201ENST00000463010 287 ntBASIC17.5■□□□□ 0.39
CLCN3P51790 RN7SL399P-201ENST00000471648 279 ntBASIC17.5■□□□□ 0.39
CLCN3P51790 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.5■□□□□ 0.39
CLCN3P51790 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CLCN3P51790 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.5■□□□□ 0.39
CLCN3P51790 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.5■□□□□ 0.39
CLCN3P51790 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.5■□□□□ 0.39
CLCN3P51790 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.5■□□□□ 0.39
CLCN3P51790 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CLCN3P51790 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CLCN3P51790 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CLCN3P51790 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
CLCN3P51790 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.5■□□□□ 0.39
CLCN3P51790 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
CLCN3P51790 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCN3P51790 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
CLCN3P51790 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLCN3P51790 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLCN3P51790 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.49■□□□□ 0.39
CLCN3P51790 MTHFR-217ENST00000641820 1569 ntBASIC17.49■□□□□ 0.39
CLCN3P51790 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
CLCN3P51790 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CLCN3P51790 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLCN3P51790 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.49■□□□□ 0.39
CLCN3P51790 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CLCN3P51790 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLCN3P51790 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.49■□□□□ 0.39
CLCN3P51790 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.49■□□□□ 0.39
CLCN3P51790 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLCN3P51790 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLCN3P51790 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLCN3P51790 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CLCN3P51790 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.49■□□□□ 0.39
CLCN3P51790 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.49■□□□□ 0.39
CLCN3P51790 AC011495.1-201ENST00000498085 584 ntBASIC17.49■□□□□ 0.39
CLCN3P51790 SLED1-202ENST00000512051 380 ntBASIC17.49■□□□□ 0.39
CLCN3P51790 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC17.49■□□□□ 0.39
CLCN3P51790 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.49■□□□□ 0.39
CLCN3P51790 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.49■□□□□ 0.39
CLCN3P51790 AC036164.1-201ENST00000570544 333 ntBASIC17.49■□□□□ 0.39
CLCN3P51790 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC17.49■□□□□ 0.39
CLCN3P51790 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLCN3P51790 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.49■□□□□ 0.39
CLCN3P51790 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLCN3P51790 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.49■□□□□ 0.39
CLCN3P51790 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.49■□□□□ 0.39
CLCN3P51790 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.49■□□□□ 0.39
CLCN3P51790 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CLCN3P51790 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLCN3P51790 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.49■□□□□ 0.39
CLCN3P51790 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.48■□□□□ 0.39
CLCN3P51790 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CLCN3P51790 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC17.48■□□□□ 0.39
CLCN3P51790 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms